Factsheet for TraesCS5A01G143100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G148900.1	Wheat	nucleus	96.03	96.27
TraesCS5B01G141900.1	Wheat	nucleus	94.54	95.01
HORVU5Hr1G045640.7	Barley	mitochondrion	92.8	82.2
Zm00001d005028_P001	Maize	cytosol	42.18	52.8
CDY29982	Canola	cytosol	22.33	52.33
Os12t0123800-01	Rice	nucleus	47.39	48.23
EES07908	Sorghum	nucleus, peroxisome, plastid	47.15	47.86
GSMUA_Achr10P...	Banana	cytosol	26.55	46.93
TraesCS3A01G077900.1	Wheat	nucleus	24.81	46.73
Zm00001d052390_P001	Maize	nucleus	42.93	46.63
GSMUA_Achr5P07600_001	Banana	cytosol	27.54	45.12
GSMUA_Achr7P18330_001	Banana	nucleus	32.01	41.88
TraesCS2A01G101200.1	Wheat	nucleus	27.54	40.22
Os11t0127000-01	Rice	nucleus	29.28	40.0
GSMUA_Achr9P16920_001	Banana	cytosol	29.78	39.22
GSMUA_Achr3P18020_001	Banana	nucleus	28.29	38.91
TraesCS4A01G130600.1	Wheat	nucleus	32.51	38.3
TraesCS4A01G242700.1	Wheat	cytosol, mitochondrion, nucleus	27.54	37.12
GSMUA_Achr6P32290_001	Banana	nucleus	31.51	36.71
GSMUA_Achr6P08600_001	Banana	nucleus	31.27	36.31
GSMUA_Achr3P09520_001	Banana	cytosol	28.29	35.85
AT5G18270.1	Thale cress	nucleus	29.78	35.82
CDY53250	Canola	nucleus	29.53	35.42
Bra023669.1-P	Field mustard	nucleus	29.53	35.42
CDX70804	Canola	nucleus	29.53	35.31
CDY02636	Canola	nucleus	29.53	35.31
Bra002148.1-P	Field mustard	nucleus	29.28	35.12
Bra006449.1-P	Field mustard	nucleus	29.28	35.12
CDY51238	Canola	nucleus	29.28	35.01
TraesCS7A01G152500.1	Wheat	nucleus	30.77	34.83
CDY50879	Canola	cytoskeleton, cytosol, nucleus	29.28	34.4
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	29.28	34.3
TraesCS7A01G194700.1	Wheat	nucleus	29.53	34.1
AT3G04060.1	Thale cress	nucleus	28.54	34.02
TraesCS7A01G305200.1	Wheat	cytosol	24.32	33.91
Bra040153.1-P	Field mustard	nucleus	28.78	33.82
TraesCS2A01G101100.1	Wheat	cytosol, nucleus, plastid	29.03	33.62
CDY42901	Canola	nucleus	28.54	33.43
TraesCS5A01G275900.1	Wheat	nucleus	30.27	33.24
TraesCS5A01G245900.2	Wheat	nucleus	27.05	33.23
KRG94783	Soybean	nucleus	33.25	33.09
VIT_08s0007g07640.t01	Wine grape	nucleus	33.0	33.0
TraesCS7A01G464100.1	Wheat	nucleus	25.06	32.9
TraesCS7A01G464800.1	Wheat	nucleus	25.06	32.79
TraesCS7A01G334800.1	Wheat	nucleus	29.53	32.78
TraesCS7A01G569300.1	Wheat	cytosol	29.28	32.6
KRH06738	Soybean	nucleus	32.75	32.43
TraesCS7A01G189200.1	Wheat	nucleus	28.04	32.38
TraesCS2A01G101400.1	Wheat	cytosol	28.29	32.29
TraesCS7A01G247600.1	Wheat	extracellular	26.3	31.45
TraesCS7A01G569100.1	Wheat	nucleus	29.53	31.32
TraesCS2A01G101000.1	Wheat	cytosol, nucleus, plastid	29.53	31.15
TraesCS2A01G338300.1	Wheat	nucleus	27.3	30.99
TraesCS5A01G049100.2	Wheat	cytosol, nucleus, peroxisome	23.33	30.72
KRH70130	Soybean	nucleus	31.02	30.49
KRH08479	Soybean	nucleus	30.52	30.0
TraesCS2A01G382400.1	Wheat	nucleus	22.58	29.35
TraesCS6A01G378600.1	Wheat	nucleus	21.59	28.43
TraesCS6A01G378500.1	Wheat	nucleus	21.59	27.97
TraesCS2A01G462500.1	Wheat	plastid	22.58	27.16
GSMUA_Achr8P21470_001	Banana	nucleus	32.51	25.39

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF23	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS5A01G143100	EnsemblPlants:TraesCS5A01G143100.1	SEG:seg

Description

No Description!

Coordinates

chr5A:-:317238743..317240437

Molecular Weight (calculated)

43691.0 Da

IEP (calculated)

7.578

GRAVY (calculated)

-0.569

Length

403 amino acids

Sequence
(BLAST)

001: MVESVAATPS EEQGRGGGLS LPPGFRFHPT DEEIITSYLL RKFLDPSFVS RAVGEVDLNS CEPRDLPGKA NMGEKEWYFF VHKDLKYPTG SRANRATKEG
101: YWKATGKDRE IFKPRARELV GMKKTLVFYR GRAPRGAKSE WVMHEFRLEG KSRGQTMNNP KDEWVVCKVF NKKGEAKAAR AADVDAEYSA VTTPNSSSVV
201: DAGEGAGDFT DSMFTIDPLC YIPNSDEYTS NQPPAKTTTS TTTNSAAPPY NADYYYPSVP TTAGSFNLMS NYSLTNATSN AQTSTAMASS VPATSGSSWQ
301: HMLMNTAPHG GMMGRRSYDV NLHEQQAIMM RALGGVVGAQ NFGEPAKGLQ LPSSAVTAGS VPPQQGKLGS YDDGEFPYGN YDLASAAMSG RPAAANNLGP
401: RFY

Best Arabidopsis Sequence Match ( AT3G18400.1 )
(BLAST)

001: MEENLPPGFR FHPTDEELIT HYLCRKVSDI GFTGKAVVDV DLNKCEPWDL PAKASMGEKE WYFFSQRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGV
101: LVGMKKTLVF YKGRAPKGEK SNWVMHEYRL ESKQPFNPTN KEEWVVCRVF EKSTAAKKAQ EQQPQSSQPS FGSPCDANSS MANEFEDIDE LPNLNSNSST
201: IDYNNHIHQY SQRNVYSEDN TTSTAGLNMN MNMASTNLQS WTTSLLGPPL SPINSLLLKA FQIRNSYSFP KEMIPSFNHS SLQQGVSNMI QNASSSSQVQ
301: PQPQEEAFNM DSIW

Arabidopsis Description

anac058NAC domain containing protein 58 [Source:UniProtKB/TrEMBL;Acc:Q9LS50]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.