Factsheet for TraesCS3B01G092900.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G014100.1	Barley	cytosol, nucleus	75.35	71.35
TraesCS7B01G056300.1	Wheat	nucleus	69.75	69.75
TraesCS7B01G094000.1	Wheat	nucleus	52.38	68.5
TraesCS7B01G100300.1	Wheat	nucleus	60.5	66.87
TraesCS7B01G489500.2	Wheat	cytosol	57.42	59.08
CDY29982	Canola	cytosol	26.89	55.81
TraesCS3B01G092800.1	Wheat	cytosol	31.93	53.52
EES02626	Sorghum	cytosol	20.73	51.75
GSMUA_Achr10P...	Banana	cytosol	31.09	48.68
GSMUA_Achr5P07600_001	Banana	cytosol	33.33	48.37
Os01t0104500-01	Rice	cytosol, mitochondrion, nucleus	38.1	42.5
GSMUA_Achr7P18330_001	Banana	nucleus	35.85	41.56
Os01t0393100-01	Rice	nucleus	37.25	40.55
GSMUA_Achr9P16920_001	Banana	cytosol	34.17	39.87
TraesCS5B01G243300.1	Wheat	nucleus	29.69	39.55
TraesCS6B01G416500.1	Wheat	nucleus	20.73	38.74
GSMUA_Achr3P09520_001	Banana	cytosol	34.17	38.36
TraesCS4B01G174000.1	Wheat	cytosol	35.57	37.24
GSMUA_Achr3P18020_001	Banana	nucleus	30.53	37.2
GSMUA_Achr6P32290_001	Banana	nucleus	35.85	36.99
GSMUA_Achr6P08600_001	Banana	nucleus	35.85	36.89
TraesCS4B01G072400.1	Wheat	cytosol, mitochondrion, nucleus	30.81	36.79
CDY02636	Canola	nucleus	33.05	35.01
CDY53250	Canola	nucleus	32.77	34.82
Bra023669.1-P	Field mustard	nucleus	32.77	34.82
AT5G18270.1	Thale cress	nucleus	32.49	34.63
AT3G04060.1	Thale cress	nucleus	32.77	34.62
Bra002148.1-P	Field mustard	nucleus	32.21	34.23
CDX70804	Canola	nucleus	32.21	34.12
Bra006449.1-P	Field mustard	nucleus	31.93	33.93
CDY51238	Canola	nucleus	31.93	33.83
CDY50879	Canola	cytoskeleton, cytosol, nucleus	32.49	33.82
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	32.49	33.72
CDY42901	Canola	nucleus	31.93	33.14
TraesCS2B01G118500.1	Wheat	cytosol	32.49	32.95
TraesCS2B01G343600.1	Wheat	nucleus	32.49	32.77
Bra040153.1-P	Field mustard	nucleus	31.37	32.65
TraesCS2B01G484100.1	Wheat	cytosol, nucleus, plastid	26.33	32.64
TraesCS7B01G143900.1	Wheat	nucleus	30.53	32.63
TraesCS5B01G275200.1	Wheat	nucleus	33.61	32.61
TraesCS2B01G118200.1	Wheat	cytosol, nucleus, plastid	31.93	32.48
KRG94783	Soybean	nucleus	36.41	32.1
VIT_08s0007g07640.t01	Wine grape	nucleus	36.13	32.01
TraesCS7B01G364600.1	Wheat	nucleus	27.45	31.92
TraesCS2B01G118400.1	Wheat	cytosol, nucleus, plastid	31.37	31.91
TraesCS7B01G205600.1	Wheat	cytosol	26.05	31.85
TraesCS7B01G365300.1	Wheat	nucleus	27.17	31.8
EES02651	Sorghum	nucleus	35.57	31.75
OQU89451	Sorghum	cytosol	33.05	31.72
Zm00001d040189_P002	Maize	mitochondrion, nucleus, peroxisome	34.73	31.71
TraesCS5B01G054200.2	Wheat	cytosol, nucleus, peroxisome	26.89	31.27
KXG28945	Sorghum	cytoskeleton, nucleus, peroxisome	32.49	31.27
Zm00001d008403_P001	Maize	plastid	28.01	31.06
KRH06738	Soybean	nucleus	35.29	30.96
EES17917	Sorghum	cytosol	33.89	30.1
TraesCS7B01G246300.1	Wheat	nucleus	30.25	29.83
KRH08479	Soybean	nucleus	34.17	29.76
TraesCS6B01G416400.1	Wheat	nucleus	24.65	29.63
KRH70130	Soybean	nucleus	33.61	29.27
TraesCS6B01G416300.1	Wheat	nucleus	24.93	28.8
TraesCS2B01G118300.1	Wheat	cytosol	31.09	28.61
TraesCS5B01G141900.1	Wheat	nucleus	31.93	28.43
TraesCS2B01G399700.1	Wheat	cytosol, mitochondrion, nucleus	24.09	28.01
GSMUA_Achr8P21470_001	Banana	nucleus	36.41	25.19

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF23	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS3B01G092900	EnsemblPlants:TraesCS3B01G092900.3	SEG:seg

Description

No Description!

Coordinates

chr3B:-:61915096..61916280

Molecular Weight (calculated)

40944.6 Da

IEP (calculated)

7.601

GRAVY (calculated)

-0.509

Length

357 amino acids

Sequence
(BLAST)

001: MEKHLQVQQQ QQLKLPSGFR FHPTDVEIIT AYLVPKVLKK PFDTREVGEV DLNKHDPWEL PEMANMGEKE WYFFSQKDHK YPTGIRTNRA TTAGYWKATG
101: KDKEIFHPPT MSLIGTKKTL VFYKGRAHKG EKTNWIMHEY RLERGKQPAP NLPTDITNTS TINASSKEEY VVCRIFHKSI GLKKVVMSSF AMPMPMVVER
201: QHGFLESITL PPLMDYNASS SLAPPLLVTA SSLYQLQATG ASLSMMEGVF LPMMNGHYFG NHHHHQMMAV PPKPSIPFYH HQQQEQQQHQ MMQMMSMDMI
301: VDQGFMVRVE PRSEPSSIVL QEDFLIALSK NDPGNDTTTT SDEIMSMNMG MDGMWKY

Best Arabidopsis Sequence Match ( AT3G18400.1 )
(BLAST)

001: MEENLPPGFR FHPTDEELIT HYLCRKVSDI GFTGKAVVDV DLNKCEPWDL PAKASMGEKE WYFFSQRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGV
101: LVGMKKTLVF YKGRAPKGEK SNWVMHEYRL ESKQPFNPTN KEEWVVCRVF EKSTAAKKAQ EQQPQSSQPS FGSPCDANSS MANEFEDIDE LPNLNSNSST
201: IDYNNHIHQY SQRNVYSEDN TTSTAGLNMN MNMASTNLQS WTTSLLGPPL SPINSLLLKA FQIRNSYSFP KEMIPSFNHS SLQQGVSNMI QNASSSSQVQ
301: PQPQEEAFNM DSIW

Arabidopsis Description

anac058NAC domain containing protein 58 [Source:UniProtKB/TrEMBL;Acc:Q9LS50]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.