Factsheet for TraesCS2B01G118300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G118400.1	Wheat	cytosol, nucleus, plastid	81.44	90.03
TraesCS2B01G118200.1	Wheat	cytosol, nucleus, plastid	80.15	88.6
TraesCS2A01G101100.1	Wheat	cytosol, nucleus, plastid	77.32	86.21
TraesCS2B01G118500.1	Wheat	cytosol	72.94	80.4
HORVU2Hr1G017350.1	Barley	nucleus	75.26	73.55
HORVU2Hr1G017370.1	Barley	cytosol, nucleus, plastid	75.0	68.47
HORVU2Hr1G017360.1	Barley	nucleus	25.77	65.79
EER97754	Sorghum	nucleus	49.74	57.96
Zm00001d022517_P001	Maize	nucleus	46.91	57.23
CDY29982	Canola	cytosol	25.26	56.98
Os07t0684800-01	Rice	cytosol	42.53	54.82
TraesCS4B01G174000.1	Wheat	cytosol	44.07	50.15
GSMUA_Achr10P...	Banana	cytosol	29.12	49.56
TraesCS3B01G092800.1	Wheat	cytosol	26.29	47.89
GSMUA_Achr5P07600_001	Banana	cytosol	29.64	46.75
GSMUA_Achr3P18020_001	Banana	nucleus	32.73	43.34
TraesCS6B01G416500.1	Wheat	nucleus	19.85	40.31
GSMUA_Achr9P16920_001	Banana	cytosol	30.93	39.22
GSMUA_Achr6P32290_001	Banana	nucleus	34.28	38.44
CDY53250	Canola	nucleus	33.25	38.39
Bra023669.1-P	Field mustard	nucleus	33.25	38.39
CDY51238	Canola	nucleus	33.25	38.28
CDX70804	Canola	nucleus	33.25	38.28
CDY02636	Canola	nucleus	33.25	38.28
AT3G04060.1	Thale cress	nucleus	33.25	38.17
Bra006449.1-P	Field mustard	nucleus	32.99	38.1
GSMUA_Achr6P08600_001	Banana	nucleus	34.02	38.04
GSMUA_Achr7P18330_001	Banana	nucleus	30.15	37.99
Bra002148.1-P	Field mustard	nucleus	32.73	37.8
GSMUA_Achr3P09520_001	Banana	cytosol	30.93	37.74
AT5G18270.1	Thale cress	nucleus	32.47	37.61
Bra040153.1-P	Field mustard	nucleus	32.47	36.73
TraesCS4B01G072400.1	Wheat	cytosol, mitochondrion, nucleus	27.84	36.12
TraesCS7B01G094000.1	Wheat	nucleus	25.26	35.9
CDY50879	Canola	cytoskeleton, cytosol, nucleus	31.7	35.86
CDY42901	Canola	nucleus	31.7	35.76
KRG94783	Soybean	nucleus	37.11	35.56
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	31.44	35.47
KRH06738	Soybean	nucleus	37.11	35.38
KRH08479	Soybean	nucleus	35.57	33.66
VIT_08s0007g07640.t01	Wine grape	nucleus	34.79	33.5
TraesCS2B01G484100.1	Wheat	cytosol, nucleus, plastid	24.74	33.33
TraesCS5B01G054200.2	Wheat	cytosol, nucleus, peroxisome	26.29	33.22
KRH70130	Soybean	nucleus	35.05	33.17
TraesCS7B01G365300.1	Wheat	nucleus	25.77	32.79
TraesCS7B01G205600.1	Wheat	cytosol	24.48	32.53
TraesCS7B01G364600.1	Wheat	nucleus	25.52	32.25
TraesCS2B01G343600.1	Wheat	nucleus	29.38	32.2
TraesCS7B01G100300.1	Wheat	nucleus	26.8	32.2
TraesCS5B01G243300.1	Wheat	nucleus	21.91	31.72
TraesCS7B01G489500.2	Wheat	cytosol	28.35	31.7
TraesCS3B01G092900.3	Wheat	nucleus	28.61	31.09
TraesCS7B01G056300.1	Wheat	nucleus	28.35	30.81
TraesCS2B01G399700.1	Wheat	cytosol, mitochondrion, nucleus	23.71	29.97
TraesCS5B01G275200.1	Wheat	nucleus	28.35	29.89
TraesCS6B01G416400.1	Wheat	nucleus	22.42	29.29
TraesCS7B01G143900.1	Wheat	nucleus	25.0	29.04
TraesCS7B01G246300.1	Wheat	nucleus	26.8	28.73
TraesCS6B01G416300.1	Wheat	nucleus	22.42	28.16
TraesCS5B01G141900.1	Wheat	nucleus	28.61	27.68
GSMUA_Achr8P21470_001	Banana	nucleus	33.25	25.0

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF47	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS2B01G118300	EnsemblPlants:TraesCS2B01G118300.1	SEG:seg

Description

No Description!

Coordinates

chr2B:+:82712719..82716082

Molecular Weight (calculated)

42946.6 Da

IEP (calculated)

4.523

GRAVY (calculated)

-0.479

Length

388 amino acids

Sequence
(BLAST)

001: MSDVTAVMDL EVEEPQLALP PGFRFHPTDE EVLRESFSCQ VITDVDLNKN EPWELPGLAK MGEKEWFFFV HKSRKYPTGT RTNRATKNGY WKATGKDKEI
101: FRGKGRDAVL VGMKKTLVFY TGRAPSGGKT PWVMHEYRLE GQLPHRLPRT AKDDWAVCRV INKDLAARNA PQMAPVADGG MDDPLAFLDD LLNNDDLINN
201: ADLLDNAGLL DNTDLPMLMD SQSCADDFAG ASSSSSSAAL PLEPDTEHLT IKTEPPHQQQ QMQRPNYFMP AKTNGNLGGD GYSPYQVMGD QQAAIRRYCK
301: PKAEVASSSA LLSPSLGLDT AALAGADTSF LMPSSRSYSY LDLEELFRGE PLMDYSNMWK ISDVEDPERL SLLVAMDGYL VDASSSID

Best Arabidopsis Sequence Match ( AT3G04060.1 )
(BLAST)

001: MVEEGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY
101: WKATGKDKEI FRGKGCLVGM KKTLVFYTGR APKGEKTNWV MHEYRLDGKY SYHNLPKTAR DEWVVCRVFH KNAPSTTITT TKQLSRIDSL DNIDHLLDFS
201: SLPPLIDPGF LGQPGPSFSG ARQQHDLKPV LHHPTTAPVD NTYLPTQALN FPYHSVHNSG SDFGYGAGSG NNNKGMIKLE HSLVSVSQET GLSSDVNTTA
301: TPEISSYPMM MNPAMMDGSK SACDGLDDLI FWEDLYTS

Arabidopsis Description

anac046NAC domain-containing protein 46 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.