Factsheet for TraesCS7B01G056300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G154200.1	Wheat	nucleus	94.12	94.38
TraesCS7A01G152500.1	Wheat	nucleus	93.0	93.26
HORVU7Hr1G031260.1	Barley	nucleus	82.35	83.05
TraesCS3B01G092900.3	Wheat	nucleus	69.75	69.75
TraesCS7B01G100300.1	Wheat	nucleus	62.47	69.04
TraesCS7B01G094000.1	Wheat	nucleus	50.7	66.3
TraesCS7B01G489500.2	Wheat	cytosol	61.06	62.82
TraesCS3B01G092800.1	Wheat	cytosol	35.29	59.15
CDY29982	Canola	cytosol	28.29	58.72
EES02626	Sorghum	cytosol	22.97	57.34
GSMUA_Achr10P...	Banana	cytosol	31.93	50.0
GSMUA_Achr5P07600_001	Banana	cytosol	33.89	49.19
Os01t0104500-01	Rice	cytosol, mitochondrion, nucleus	40.62	45.31
Os01t0393100-01	Rice	nucleus	39.5	42.99
GSMUA_Achr7P18330_001	Banana	nucleus	36.69	42.53
GSMUA_Achr9P16920_001	Banana	cytosol	36.13	42.16
TraesCS6B01G416500.1	Wheat	nucleus	21.85	40.84
TraesCS4B01G174000.1	Wheat	cytosol	38.94	40.76
GSMUA_Achr3P09520_001	Banana	cytosol	36.13	40.57
TraesCS5B01G243300.1	Wheat	nucleus	30.25	40.3
GSMUA_Achr3P18020_001	Banana	nucleus	32.77	39.93
GSMUA_Achr6P08600_001	Banana	nucleus	38.38	39.48
TraesCS4B01G072400.1	Wheat	cytosol, mitochondrion, nucleus	32.77	39.13
GSMUA_Achr6P32290_001	Banana	nucleus	37.53	38.73
CDX70804	Canola	nucleus	34.17	36.2
AT5G18270.1	Thale cress	nucleus	33.89	36.12
Bra006449.1-P	Field mustard	nucleus	33.89	36.01
CDY02636	Canola	nucleus	33.89	35.91
CDY51238	Canola	nucleus	33.89	35.91
Bra023669.1-P	Field mustard	nucleus	33.61	35.71
CDY53250	Canola	nucleus	33.61	35.71
AT3G04060.1	Thale cress	nucleus	33.61	35.5
Bra002148.1-P	Field mustard	nucleus	33.33	35.42
EES02651	Sorghum	nucleus	39.5	35.25
Zm00001d040189_P002	Maize	mitochondrion, nucleus, peroxisome	38.38	35.04
TraesCS7B01G143900.1	Wheat	nucleus	32.77	35.03
OQU89451	Sorghum	cytosol	36.13	34.68
KRG94783	Soybean	nucleus	39.22	34.57
TraesCS5B01G275200.1	Wheat	nucleus	35.57	34.51
VIT_08s0007g07640.t01	Wine grape	nucleus	38.66	34.24
CDY50879	Canola	cytoskeleton, cytosol, nucleus	32.77	34.11
TraesCS2B01G118500.1	Wheat	cytosol	33.61	34.09
TraesCS2B01G484100.1	Wheat	cytosol, nucleus, plastid	27.45	34.03
CDY42901	Canola	nucleus	32.77	34.01
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	32.77	34.01
KXG28945	Sorghum	cytoskeleton, nucleus, peroxisome	35.29	33.96
TraesCS2B01G343600.1	Wheat	nucleus	33.33	33.62
Zm00001d008403_P001	Maize	plastid	30.25	33.54
Bra040153.1-P	Field mustard	nucleus	32.21	33.53
KRH06738	Soybean	nucleus	38.1	33.42
EES17917	Sorghum	cytosol	37.25	33.08
TraesCS7B01G205600.1	Wheat	cytosol	26.89	32.88
TraesCS2B01G118200.1	Wheat	cytosol, nucleus, plastid	32.21	32.76
TraesCS7B01G365300.1	Wheat	nucleus	27.73	32.46
TraesCS5B01G054200.2	Wheat	cytosol, nucleus, peroxisome	27.73	32.25
TraesCS7B01G364600.1	Wheat	nucleus	27.73	32.25
TraesCS2B01G118400.1	Wheat	cytosol, nucleus, plastid	31.65	32.19
KRH08479	Soybean	nucleus	36.41	31.71
KRH70130	Soybean	nucleus	36.13	31.46
TraesCS7B01G246300.1	Wheat	nucleus	31.65	31.22
TraesCS6B01G416400.1	Wheat	nucleus	25.49	30.64
TraesCS6B01G416300.1	Wheat	nucleus	26.33	30.42
TraesCS5B01G141900.1	Wheat	nucleus	33.33	29.68
TraesCS2B01G399700.1	Wheat	cytosol, mitochondrion, nucleus	25.21	29.32
TraesCS2B01G118300.1	Wheat	cytosol	30.81	28.35
GSMUA_Achr8P21470_001	Banana	nucleus	38.38	26.55

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF23	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS7B01G056300	EnsemblPlants:TraesCS7B01G056300.1	SEG:seg

Description

No Description!

Coordinates

chr7B:-:59179303..59180486

Molecular Weight (calculated)

40189.9 Da

IEP (calculated)

7.562

GRAVY (calculated)

-0.536

Length

357 amino acids

Sequence
(BLAST)

001: MADHLQVQRQ QLKFPQGFRF HPTDVEIITS YLVPKVLNKA FDPIAIGEVD LNKCEPWELP EKAKMGEKEW YFFSQKDRKY PTGIRTNRAT TSGYWKATGK
101: DKEIFHHVTT SLIGMKKTLV FYKGRAPRGE KTNWVMHEYR LECGKQGTPG LPTDITTATA INASSKEEYV VCRIFHKSTG LKKVVVSSYA IPMSMPMGAE
201: EQHAFHESGT LPPFMGYGAS SSLVPPSSVP TSSSYQLHDV GARSSMMGSA VLPMMNDHYF RNHHYQNMAT PPRPLVSFYH HDHHHQQQQQ QQHMIQMPMQ
301: MQIGADEGLM IGVEPGSGPS SIVSQEDTLA RFSSNDVATT ADEISSVNMG TDDIWKY

Best Arabidopsis Sequence Match ( AT2G24430.1 )
(BLAST)

001: MEQGDHQQHK KEEEALPPGF RFHPTDEELI SYYLVNKIAD QNFTGKAIAD VDLNKSEPWE LPEKAKMGGK EWYFFSLRDR KYPTGVRTNR ATNTGYWKTT
101: GKDKEIFNST TSELVGMKKT LVFYRGRAPR GEKTCWVMHE YRLHSKSSYR TSKQDEWVVC RVFKKTEATK KYISTSSSST SHHHNNHTRA SILSTNNNNP
201: NYSSDLLQLP PHLQPHPSLN INQSLMANAV HLAELSRVFR ASTSTTMDSS HQQLMNYTHM PVSGLNLNLG GALVQPPPVV SLEDVAAVSA SYNGENGFGN
301: VEMSQCMDLD GYWPSY

Arabidopsis Description

ANAC038NAC domain containing protein 38 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.