Factsheet for TraesCS3D01G078500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G077900.1	Wheat	nucleus	87.11	91.59
TraesCS3B01G092800.1	Wheat	cytosol	84.89	89.67
HORVU3Hr1G014090.1	Barley	nucleus	82.67	85.71
CDY29982	Canola	cytosol	44.44	58.14
EES02626	Sorghum	cytosol	36.0	56.64
GSMUA_Achr10P...	Banana	cytosol	47.56	46.93
GSMUA_Achr5P07600_001	Banana	cytosol	47.56	43.5
GSMUA_Achr9P16920_001	Banana	cytosol	50.67	37.25
GSMUA_Achr3P18020_001	Banana	nucleus	47.56	36.52
TraesCS2D01G100800.1	Wheat	nucleus	43.56	35.51
TraesCS7D01G154200.1	Wheat	nucleus	56.0	35.39
GSMUA_Achr7P18330_001	Banana	nucleus	48.0	35.06
Os01t0104500-01	Rice	cytosol, mitochondrion, nucleus	49.78	35.0
GSMUA_Achr3P09520_001	Banana	cytosol	49.33	34.91
TraesCS7D01G189900.1	Wheat	nucleus	49.78	34.67
TraesCS7D01G543400.1	Wheat	nucleus	52.0	34.41
Os01t0393100-01	Rice	nucleus	49.78	34.15
AT5G18270.1	Thale cress	nucleus	50.67	34.03
TraesCS4D01G071200.1	Wheat	cytosol, mitochondrion, nucleus	44.0	33.11
CDY53250	Canola	nucleus	49.33	33.04
Bra006449.1-P	Field mustard	nucleus	49.33	33.04
Bra023669.1-P	Field mustard	nucleus	49.33	33.04
CDY51238	Canola	nucleus	49.33	32.94
CDY02636	Canola	nucleus	49.33	32.94
CDX70804	Canola	nucleus	49.33	32.94
AT3G04060.1	Thale cress	nucleus	49.33	32.84
Bra002148.1-P	Field mustard	nucleus	48.44	32.44
GSMUA_Achr6P08600_001	Banana	nucleus	49.78	32.28
TraesCS7D01G196300.1	Wheat	cytosol, nucleus, peroxisome	49.78	32.09
CDY42901	Canola	nucleus	48.0	31.4
CDY50879	Canola	cytoskeleton, cytosol, nucleus	47.56	31.2
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	47.56	31.1
TraesCS4D01G176000.1	Wheat	nucleus	47.11	30.99
GSMUA_Achr6P32290_001	Banana	nucleus	47.56	30.92
Bra040153.1-P	Field mustard	nucleus	47.11	30.9
TraesCS7D01G543500.2	Wheat	endoplasmic reticulum	52.0	30.79
KRG94783	Soybean	nucleus	54.22	30.12
KRH06738	Soybean	nucleus	54.22	29.98
KRH08479	Soybean	nucleus	54.22	29.76
TraesCS2D01G100900.1	Wheat	nucleus	46.22	29.46
TraesCS7D01G246100.1	Wheat	cytosol	43.56	29.25
TraesCS5D01G283200.1	Wheat	mitochondrion, nucleus, plastid	47.11	29.12
VIT_08s0007g07640.t01	Wine grape	nucleus	51.56	28.78
KRH70130	Soybean	nucleus	51.56	28.29
TraesCS5D01G059700.2	Wheat	cytosol, nucleus, peroxisome	37.78	28.05
Zm00001d040189_P002	Maize	mitochondrion, nucleus, peroxisome	48.44	27.88
EES02651	Sorghum	nucleus	49.33	27.75
TraesCS7D01G452500.1	Wheat	nucleus	37.78	27.6
TraesCS7D01G451700.1	Wheat	nucleus	38.22	27.56
KXG28945	Sorghum	cytoskeleton, nucleus, peroxisome	45.33	27.49
TraesCS2D01G100600.1	Wheat	cytosol, nucleus, plastid	44.89	27.45
TraesCS2D01G462900.1	Wheat	cytosol, nucleus, plastid	35.56	27.4
TraesCS2D01G324700.1	Wheat	nucleus	42.67	27.2
TraesCS7D01G302000.1	Wheat	cytosol	35.11	27.15
TraesCS7D01G342300.1	Wheat	nucleus	43.56	27.07
OQU89451	Sorghum	cytosol	44.44	26.88
TraesCS6D01G362900.1	Wheat	nucleus	35.56	26.4
EES17917	Sorghum	cytosol	46.67	26.12
TraesCS2D01G378800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	36.44	26.03
TraesCS6D01G362800.1	Wheat	nucleus	35.11	25.32
TraesCS5D01G148900.1	Wheat	nucleus	44.0	24.63
Zm00001d008403_P001	Maize	plastid	34.67	24.22
TraesCS2D01G100700.1	Wheat	cytosol, endoplasmic reticulum, nucleus	45.78	24.12
GSMUA_Achr8P21470_001	Banana	nucleus	48.89	21.32

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF23	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS3D01G078500	EnsemblPlants:TraesCS3D01G078500.1	SEG:seg

Description

No Description!

Coordinates

chr3D:-:39032060..39032868

Molecular Weight (calculated)

24980.5 Da

IEP (calculated)

8.582

GRAVY (calculated)

-0.709

Length

225 amino acids

Sequence
(BLAST)

001: MADHLQVQQQ QQQLELPPGY RFHPTDEEII TSYLAPKILN PAFDATAIGE VDVNKNEPWE LPKKAKMGEN EWYFYCQKDR KYPTGIRTNQ ATKAGYWKTT
101: GKDKEIVNPH CTSMLIGMKK TLVFYKGRAP SGEKTNWVMH EYRLEIGKQS TTGLPTAITN AASINASSKE YVVCRIFHKN TGSGLSSMVS HEDVGTRPGN
201: NDQGNGSGTT THKISSMSMG TDGAC

Best Arabidopsis Sequence Match ( AT5G07680.1 )
(BLAST)

001: METFGVFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHKKVL DLGFSAKAIG EVDLNKAEPW ELPYKAKIGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA
101: TGKDKEIFRG KSLVGMKKTL VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI RIGSYGTGSS LPPLTDSSPY
201: NDKTKTEPVY VPCFSNQAET RGTILNCFSN PSLSSIQPDF LQMIPLYQPQ SLNISESSNP VLTQEQSVLQ AMMENNRRQN FKTLSISQET GVSNTDNSSV
301: FEFGRKRFDH QEVPSPSSGP VDLEPFWNY

Arabidopsis Description

NAC079NAC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UL34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.