Factsheet for TraesCS7D01G189900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G094000.1	Wheat	nucleus	77.09	91.21
TraesCS7A01G189200.1	Wheat	nucleus	89.47	82.81
TraesCS7D01G196300.1	Wheat	cytosol, nucleus, peroxisome	76.16	70.49
HORVU4Hr1G089450.1	Barley	cytosol, mitochondrion, nucleus, peroxisome	72.76	67.14
TraesCS7D01G154200.1	Wheat	nucleus	67.8	61.52
TraesCS7D01G543400.1	Wheat	nucleus	61.61	58.53
EES02626	Sorghum	cytosol	23.53	53.15
CDY29982	Canola	cytosol	27.86	52.33
TraesCS7D01G543500.2	Wheat	endoplasmic reticulum	59.13	50.26
TraesCS3D01G078500.1	Wheat	nucleus	34.67	49.78
GSMUA_Achr5P07600_001	Banana	cytosol	35.91	47.15
GSMUA_Achr10P...	Banana	cytosol	31.27	44.3
GSMUA_Achr9P16920_001	Banana	cytosol	38.08	40.2
Os01t0104500-01	Rice	cytosol, mitochondrion, nucleus	39.63	40.0
GSMUA_Achr7P18330_001	Banana	nucleus	37.77	39.61
Os01t0393100-01	Rice	nucleus	39.32	38.72
GSMUA_Achr3P09520_001	Banana	cytosol	37.77	38.36
GSMUA_Achr6P32290_001	Banana	nucleus	39.63	36.99
TraesCS2D01G100800.1	Wheat	nucleus	30.65	35.87
GSMUA_Achr3P18020_001	Banana	nucleus	32.51	35.84
TraesCS4D01G176000.1	Wheat	nucleus	37.77	35.67
GSMUA_Achr6P08600_001	Banana	nucleus	38.08	35.45
TraesCS4D01G071200.1	Wheat	cytosol, mitochondrion, nucleus	32.2	34.78
CDY02636	Canola	nucleus	35.91	34.42
AT5G18270.1	Thale cress	nucleus	35.6	34.33
CDY53250	Canola	nucleus	35.6	34.23
Bra023669.1-P	Field mustard	nucleus	35.6	34.23
Bra002148.1-P	Field mustard	nucleus	34.98	33.63
CDX70804	Canola	nucleus	34.98	33.53
CDY50879	Canola	cytoskeleton, cytosol, nucleus	35.6	33.53
AT3G04060.1	Thale cress	nucleus	34.98	33.43
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	35.6	33.43
Bra006449.1-P	Field mustard	nucleus	34.67	33.33
CDY51238	Canola	nucleus	34.67	33.23
CDY42901	Canola	nucleus	34.98	32.85
Bra040153.1-P	Field mustard	nucleus	34.37	32.36
TraesCS7D01G246100.1	Wheat	cytosol	32.82	31.64
TraesCS5D01G283200.1	Wheat	mitochondrion, nucleus, plastid	35.6	31.59
KRG94783	Soybean	nucleus	39.01	31.11
VIT_08s0007g07640.t01	Wine grape	nucleus	38.39	30.77
KXG28945	Sorghum	cytoskeleton, nucleus, peroxisome	35.29	30.73
KRH06738	Soybean	nucleus	38.39	30.47
TraesCS2D01G100900.1	Wheat	nucleus	33.13	30.31
TraesCS2D01G324700.1	Wheat	nucleus	33.13	30.31
TraesCS5D01G059700.2	Wheat	cytosol, nucleus, peroxisome	28.17	30.03
TraesCS7D01G302000.1	Wheat	cytosol	26.93	29.9
TraesCS2D01G462900.1	Wheat	cytosol, nucleus, plastid	26.93	29.79
OQU89451	Sorghum	cytosol	34.06	29.57
Zm00001d040189_P002	Maize	mitochondrion, nucleus, peroxisome	35.6	29.41
KRH08479	Soybean	nucleus	36.84	29.02
TraesCS2D01G100600.1	Wheat	cytosol, nucleus, plastid	32.82	28.8
EES02651	Sorghum	nucleus	35.6	28.75
TraesCS7D01G452500.1	Wheat	nucleus	27.24	28.57
KRH70130	Soybean	nucleus	36.22	28.54
TraesCS7D01G451700.1	Wheat	nucleus	27.55	28.53
TraesCS6D01G362900.1	Wheat	nucleus	26.63	28.38
TraesCS7D01G342300.1	Wheat	nucleus	31.27	27.9
TraesCS5D01G148900.1	Wheat	nucleus	34.67	27.86
Zm00001d008403_P001	Maize	plastid	27.24	27.33
EES17917	Sorghum	cytosol	33.75	27.11
TraesCS6D01G362800.1	Wheat	nucleus	25.39	26.28
GSMUA_Achr8P21470_001	Banana	nucleus	40.25	25.19
TraesCS2D01G378800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	24.46	25.08
TraesCS2D01G100700.1	Wheat	cytosol, endoplasmic reticulum, nucleus	32.82	24.82

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF23	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS7D01G189900	EnsemblPlants:TraesCS7D01G189900.1	SEG:seg

Description

No Description!

Coordinates

chr7D:-:143974689..143975773

Molecular Weight (calculated)

36343.0 Da

IEP (calculated)

7.997

GRAVY (calculated)

-0.391

Length

323 amino acids

Sequence
(BLAST)

001: MADHLQVQEQ QQQLNLPPGF RFQPTDMEII TFYLVPKVLK KVFNTTVVEE VDLNKCEPWD LLKKVNMGDK GRYFFSQKDL KYSIGIRTNG ATKAGYWKAT
101: GKDKEIIHPP TMSIIGMKKT LVFYKGRAPK GEKTNWIMHE YRLESGKQPT PNLPTNIAKA TTINASSKGE YVVCRIFHKS TGLKKVMMPS YDMSIPMSMG
201: GEKQQGFLDS TTLDPLMDCD VLSSLAPPPP LPATSLDQTH TFEAGSFVMG SAVLPMMNNH YFGNHYQQMM ALPQSMSFYN NHQQQQMMEM SVDQGFMVGV
301: DPGSVSSSIV CHEDVVTWLS NNN

Best Arabidopsis Sequence Match ( AT3G18400.1 )
(BLAST)

001: MEENLPPGFR FHPTDEELIT HYLCRKVSDI GFTGKAVVDV DLNKCEPWDL PAKASMGEKE WYFFSQRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGV
101: LVGMKKTLVF YKGRAPKGEK SNWVMHEYRL ESKQPFNPTN KEEWVVCRVF EKSTAAKKAQ EQQPQSSQPS FGSPCDANSS MANEFEDIDE LPNLNSNSST
201: IDYNNHIHQY SQRNVYSEDN TTSTAGLNMN MNMASTNLQS WTTSLLGPPL SPINSLLLKA FQIRNSYSFP KEMIPSFNHS SLQQGVSNMI QNASSSSQVQ
301: PQPQEEAFNM DSIW

Arabidopsis Description

anac058NAC domain containing protein 58 [Source:UniProtKB/TrEMBL;Acc:Q9LS50]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.