Factsheet for Os03t0854800-03

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0104500-01
Os01t0393100-01
Os02t0516800-00
Os02t0606200-01
Os02t0724000-01
Os03t0211500-01
Os03t0327100-01
Os04t0397500-00
Os04t0493000-01
Os06t0298200-01
Os06t0716800-01
Os07t0684800-01
Os10t0325400-01
Os10t0556200-01
Os11t0127000-01
Os12t0123800-01
Os12t0572000-01
Os12t0641100-04

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32230.1	Os02t0606200-01	AT1G06040.1	11018516
AT1G32230.1	Os04t0493000-01	AT1G06040.1	11018516
AT1G32230.1	Os02t0606200-01	AT1G06040.1	19548978
AT1G32230.1	Os04t0493000-01	AT1G06040.1	19548978
AT1G32230.1	Os12t0641100-04	AT2G01980.1	17023541
AT1G32230.1	Os06t0716800-01	AT2G16770.1	19548978
AT1G32230.1	Os02t0516800-00	AT2G33550.1	19548978
AT1G32230.1	Os04t0397500-00	AT2G33550.1	19548978
AT1G32230.1	Os12t0572000-01	AT2G37630.1	19548978
AT1G32230.1	Os01t0104500-01	AT3G04060.1	19548978
AT1G32230.1	Os01t0393100-01	AT3G04060.1	19548978
AT1G32230.1	Os03t0327100-01	AT3G04060.1	19548978
AT1G32230.1	Os07t0684800-01	AT3G04060.1	19548978
AT1G32230.1	Os11t0127000-01	AT3G04060.1	19548978
AT1G32230.1	Os12t0123800-01	AT3G04060.1	19548978
AT1G32230.1	Os01t0104500-01	AT3G04060.1	25348421
AT1G32230.1	Os01t0393100-01	AT3G04060.1	25348421
AT1G32230.1	Os03t0327100-01	AT3G04060.1	25348421
AT1G32230.1	Os07t0684800-01	AT3G04060.1	25348421
AT1G32230.1	Os11t0127000-01	AT3G04060.1	25348421
AT1G32230.1	Os12t0123800-01	AT3G04060.1	25348421
AT1G32230.1	Os10t0556200-01	AT4G00050.1	19548978
AT1G32230.1	Os02t0724000-01	AT5G48250.1	19548978
AT1G32230.1	Os06t0298200-01	AT5G48250.1	19548978
AT1G32230.1	Os03t0211500-01	AT5G61270.1	19548978
AT1G32230.1	Os10t0325400-01	AT5G61270.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G124010.1	Barley	nucleus	54.45	54.92
TraesCS5B01G557500.2	Wheat	nucleus	53.94	54.5
TraesCS5D01G551800.3	Wheat	nucleus	53.42	53.98
TraesCS4A01G321300.1	Wheat	nucleus	52.57	53.95
EER90487	Sorghum	nucleus	51.71	52.71
HORVU0Hr1G014460.1	Barley	nucleus	44.52	45.06
Zm00001d012821_P003	Maize	extracellular, vacuole	50.51	44.97
GSMUA_Achr11P...	Banana	nucleus	38.01	42.69
GSMUA_Achr5P14120_001	Banana	nucleus	39.9	41.17
GSMUA_Achr2P18060_001	Banana	nucleus	40.07	40.7
GSMUA_Achr8P14660_001	Banana	cytosol, endoplasmic reticulum, nucleus	37.33	39.64
GSMUA_Achr4P19000_001	Banana	nucleus	27.74	38.66
Os10t0577800-01	Rice	nucleus	38.36	37.9
VIT_02s0012g01920.t01	Wine grape	cytosol	27.74	30.39
CDY60257	Canola	cytosol	16.78	29.97
Solyc08g005270.2.1	Tomato	nucleus	30.48	29.67
VIT_02s0012g01930.t01	Wine grape	nucleus	31.51	29.53
Bra017317.1-P	Field mustard	nucleus	26.03	28.68
CDY32124	Canola	nucleus	26.03	28.68
PGSC0003DMT400038368	Potato	nucleus	28.6	28.35
KRH74370	Soybean	mitochondrion, nucleus, plastid	28.08	28.13
KRH39574	Soybean	mitochondrion, nucleus, plastid	27.91	27.96
Bra023252.1-P	Field mustard	nucleus	22.95	27.8
Solyc08g076420.2.1	Tomato	nucleus	27.91	27.3
CDX84199	Canola	cytosol, nucleus, plastid	22.77	26.98
CDY67026	Canola	nucleus	25.34	26.91
CDY22597	Canola	nucleus	25.0	26.84
PGSC0003DMT400043197	Potato	nucleus	27.05	26.6
AT2G35510.3	Thale cress	cytosol	25.86	26.58
Bra005336.1-P	Field mustard	cytosol, nucleus, plastid	23.8	26.53
CDY31694	Canola	nucleus	23.8	26.33
CDY43007	Canola	nucleus	25.68	25.82
Solyc06g066330.2.1	Tomato	nucleus	25.68	25.25
Bra035511.1-P	Field mustard	cytosol	23.97	25.09
AT1G32230.1	Thale cress	nucleus	25.17	24.96
CDY41739	Canola	cytosol	21.92	23.27
Os03t0230300-01	Rice	nucleus	18.32	23.11
KRH74373	Soybean	mitochondrion	17.47	21.38
Os04t0672200-01	Rice	extracellular	23.12	14.08
Os06t0248400-01	Rice	nucleus	17.64	13.43

Protein Annotations

Gene3D:3.90.228.10	MapMan:35.1	EntrezGene:4334829	ProteinID:AAO66528.1	ProteinID:ABF99965.1	ProteinID:ABF99966.1
ProteinID:ABF99967.1	ProteinID:ABF99968.1	ProteinID:ABF99969.1	ProteinID:BAS87430.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0003950	GO:GO:0016740	InterPro:IPR012317	EnsemblPlantsGene:Os03g0854800	EnsemblPlants:Os03t0854800-03	PFAM:PF12174
PFscan:PS51059	PANTHER:PTHR32263	PANTHER:PTHR32263:SF4	InterPro:Poly(ADP-ribose)pol_cat_dom	UniProt:Q84T80	InterPro:RST
SUPFAM:SSF56399	UniParc:UPI0000056189	RefSeq:XP_015630932.1	RefSeq:XP_015630933.1	RefSeq:XP_015630934.1	RefSeq:XP_015630935.1
SEG:seg	:	:	:	:	:

Description

Similar to Poly polymerase catalytic domain containing protein, expressed. (Os03t0854800-01);Hypothetical conserved gene. (Os03t0854800-02);Similar to Poly polymerase catalytic domain containing protein, expressed. (Os03t0854800-03)

Coordinates

chr3:-:36001958..36007215

Molecular Weight (calculated)

64523.7 Da

IEP (calculated)

6.893

GRAVY (calculated)

-0.468

Length

584 amino acids

Sequence
(BLAST)

001: MEPKNAIALD EHVLDSTIRK RKRVGATQCA EANDAPNLSQ NGPKQNLALF PDSTGHKKSK MMCSADDILE RYNNFKISGM PVRVMSHQHG GWRDFPEDVV
101: NSVQQSFQLK RPITSAVFQN RHILLDFMQM VCLDSVMAIS KPIAWIDDHG KCFSPDSCAG VIPSEPLQHG KNEFLKSFHD LSSSYEAHEH DGMSAAESSS
201: SASFDAVLSD VQEVNNVVED KQKVLNESGE VSGENKKGHL SHMNETADGA MQAPRNNQSV QRADSAVRNL LFQGSGHLFT EKDIIGIYRT PMLDQLGRSR
301: YSLFQKEVQV TKNQRGNANE RYAWLACTKG TMEEMMMNGA LEIAKPLQGP MYGVGAHLAP ANSSNICVGL SDIDENGIIR MMLCRVIMGN VEVVFPGSNQ
401: CQPTSESFDS GVDDLQRPKH YIIWDANVHK HIYAEYAVII KVPYMNNGDT ASNISEIRNS GALDNPTKDD SLQTIASSGD EQQACMLGRA PSPRSPSSPW
501: MPFSMLFAAI SAKVPRSDMD LVHKYYEEFK RRKISRPDLV KQLRQIVGDK LLVSTVVRLQ QKLPPMAATE QAPRAPGRGG GASP

Best Arabidopsis Sequence Match ( AT1G32230.1 )
(BLAST)

001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL

Arabidopsis Description

RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.