Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, cytosol, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0771100-01 | |
| Os03t0854800-03 | |
| Os10t0577800-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0493000-01 | Rice | cytosol | 41.33 | 60.87 |
| GSMUA_Achr9P02360_001 | Banana | cytosol | 53.14 | 60.5 |
| VIT_05s0102g00750.t01 | Wine grape | nucleus | 50.18 | 56.9 |
| GSMUA_Achr6P21320_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 52.4 | 55.91 |
| Solyc06g073180.2.1 | Tomato | nucleus | 47.23 | 54.94 |
| PGSC0003DMT400069498 | Potato | nucleus | 47.23 | 54.94 |
| KRH23214 | Soybean | nucleus | 48.34 | 54.81 |
| CDY15558 | Canola | nucleus | 48.34 | 54.58 |
| Bra030635.1-P | Field mustard | nucleus | 48.34 | 54.36 |
| CDX86539 | Canola | nucleus | 48.34 | 54.36 |
| KRH29616 | Soybean | nucleus | 47.6 | 54.2 |
| KRH24617 | Soybean | nucleus | 47.23 | 53.78 |
| CDY06194 | Canola | nucleus | 46.13 | 53.42 |
| Bra015469.1-P | Field mustard | nucleus | 47.6 | 53.09 |
| Bra032441.1-P | Field mustard | nucleus | 45.76 | 52.99 |
| CDY09992 | Canola | nucleus | 45.76 | 52.77 |
| AT2G31380.1 | Thale cress | nucleus | 45.02 | 51.26 |
| Bra021734.1-P | Field mustard | nucleus | 45.39 | 51.25 |
| CDY19093 | Canola | nucleus | 45.02 | 51.05 |
| CDY15382 | Canola | nucleus | 45.39 | 50.83 |
| CDY56613 | Canola | nucleus | 45.02 | 50.21 |
| AT1G06040.1 | Thale cress | nucleus | 45.76 | 50.0 |
| Bra018249.1-P | Field mustard | nucleus | 44.65 | 49.79 |
| CDY10800 | Canola | nucleus | 44.28 | 49.38 |
| KRH10122 | Soybean | nucleus | 47.6 | 32.91 |
| Os12t0209200-01 | Rice | cytosol | 25.46 | 32.86 |
| Os04t0540200-01 | Rice | nucleus | 29.52 | 32.0 |
| Os02t0646200-01 | Rice | nucleus | 28.78 | 29.0 |
| Os09t0527900-01 | Rice | cytosol | 19.93 | 25.59 |
| Os06t0713000-01 | Rice | nucleus | 28.78 | 25.32 |
| Os06t0152200-01 | Rice | nucleus | 33.58 | 25.28 |
| Os01t0202500-01 | Rice | cytosol, nucleus | 32.47 | 24.86 |
| Os05t0204600-01 | Rice | cytosol, nucleus, plastid | 31.73 | 22.75 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | EntrezGene:4329923 | EMBL:AB001885 | EMBL:AK061044 | EMBL:AK104293 |
| ProteinID:BAD19334.1 | ProteinID:BAD20130.1 | ProteinID:BAF09290.1 | ProteinID:BAS79662.1 | GO:GO:0000989 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009628 | GO:GO:0009640 | GO:GO:0009791 | GO:GO:0009987 | EMBL:HQ858805 | InterPro:IPR000315 |
| UniProt:O82115 | EnsemblPlantsGene:Os02g0606200 | EnsemblPlants:Os02t0606200-01 | PFAM:PF00643 | PFscan:PS50119 | PANTHER:PTHR31832 |
| PANTHER:PTHR31832:SF30 | SMART:SM00336 | UniParc:UPI00000A8D51 | RefSeq:XP_015626533.1 | InterPro:Znf_B-box | SEG:seg |
Description
B-box-containing protein 4Zinc finger, B-box domain containing protein. (Os02t0606200-01)
Coordinates
chr2:+:23759252..23760433
Molecular Weight (calculated)
29149.8 Da
IEP (calculated)
4.738
GRAVY (calculated)
-0.330
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDACES AAAAVVCCAD EAALCAACDV EVHAANKLAG KHQRLPLEAL SARLPRCDVC QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT
101: GIRVGFASAS PCDGGSDAHD SDHHAPPMGS SEHHHHHQQP APTVAVDTPS PQFLPQGWAV DELLQFSDYE TGDKLQKESS PPLGFQELEW FADIDLFHNQ
201: APKGGAAAGR TTAEVPELFA SQAANDVAYY RPPTRTAAAA FTAATGFRQS KKARVELPDD EEDYLIVPDL G
101: GIRVGFASAS PCDGGSDAHD SDHHAPPMGS SEHHHHHQQP APTVAVDTPS PQFLPQGWAV DELLQFSDYE TGDKLQKESS PPLGFQELEW FADIDLFHNQ
201: APKGGAAAGR TTAEVPELFA SQAANDVAYY RPPTRTAAAA FTAATGFRQS KKARVELPDD EEDYLIVPDL G
001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG
Arabidopsis Description
BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.