Factsheet for Os05t0204600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037735_P001	Maize	cytosol	60.32	70.81
EES17867	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	62.7	70.54
Os01t0202500-01	Rice	cytosol, nucleus	51.59	55.08
Os12t0209200-01	Rice	cytosol	23.81	42.86
Os06t0152200-01	Rice	nucleus	36.77	38.61
Os04t0540200-01	Rice	nucleus	21.43	32.4
Os02t0606200-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	22.75	31.73
Os02t0646200-01	Rice	nucleus	21.69	30.48
Os09t0527900-01	Rice	cytosol	15.34	27.49
Os06t0713000-01	Rice	nucleus	20.9	25.65
Os04t0493000-01	Rice	cytosol	11.64	23.91

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	EntrezGene:4338069	ProteinID:AAT85120.1	ProteinID:BAF16805.1	ProteinID:BAS92741.1
GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009791	GO:GO:0009987
InterPro:IPR000315	EnsemblPlantsGene:Os05g0204600	EnsemblPlants:Os05t0204600-01	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832
PANTHER:PTHR31832:SF9	UniProt:Q6ATK0	SMART:SM00336	SUPFAM:SSF57845	UniParc:UPI0000401B5F	RefSeq:XP_015638101.1
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

B-box-containing protein 14, DOUBLE B-BOX zinc finger gene 3b, DOUBLE B-BOX 3bB-box zinc finger protein, Repressor of flowering under long and short-day conditions (Os05t0204600-01)

Coordinates

chr5:+:6514746..6517280

Molecular Weight (calculated)

39401.7 Da

IEP (calculated)

5.693

GRAVY (calculated)

-0.417

Length

378 amino acids

Sequence
(BLAST)

001: MSPPPPPYYH HLLLLRSSPT TTGGGARVLA AAELARMKLL CSACEAAEAS VLCCADEAAL CARCDRDIHA ANRLAGKHLR LPLLSPASSS SSSAAALAPP
101: PPSPPKCDIC QESHAYFFCL EDRALLCRSC DVAVHTANAF VSAHRRFLLT GVQVGQEQDE HSPDPPEPSP PPPPPPPASK SDHPAPLYGE GGGGFSWDAA
201: DSPAAGGLPD WSAVVDQFGS PPPPRHTDTA TVTTPPPTKR SPRAPAFGGQ GGMMDWPLGE FFGGFTDFTG GFGFGFGDSG TSKADSGKLG GSTDGSPYYR
301: SSSEDDRNAD ELFGQVPEIQ WSVPELPSPP TASGLHWQRH PAATHGGGGG GPDTTAFVPD ICSPDSCFPA TTSKRRRQ

Best Arabidopsis Sequence Match ( AT1G78600.1 )
(BLAST)

001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF

Arabidopsis Description

LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.