CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol, golgi, plasma membrane, vacuole, endoplasmic reticulum, plastid

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 4
endoplasmic reticulum 4
vacuole 4
nucleus 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037735_P001	Maize	cytosol	88.99	92.86
Os05t0204600-01	Rice	cytosol, nucleus, plastid	70.54	62.7
EES02283	Sorghum	nucleus	55.65	53.12
KXG19323	Sorghum	nucleus	44.35	39.73
EES15831	Sorghum	nucleus	26.19	35.92
EES12431	Sorghum	nucleus	26.19	32.84
EES07119	Sorghum	nucleus	25.3	32.32
OQU82040	Sorghum	nucleus	24.4	30.94
EER97079	Sorghum	cytosol	18.45	29.38
EES07539	Sorghum	nucleus	25.6	29.15
EER90373	Sorghum	cytosol	20.83	22.95

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	EntrezGene:8055733	UniProt:C5YUM1	EnsemblPlants:EES17867	ProteinID:EES17867
ProteinID:EES17867.1	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009791
GO:GO:0009987	InterPro:IPR000315	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF9
SMART:SM00336	EnsemblPlantsGene:SORBI_3009G075600	UniParc:UPI0001A889C1	RefSeq:XP_002439437.1	InterPro:Znf_B-box	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:9872198..9874596

Molecular Weight (calculated)

34867.4 Da

IEP (calculated)

4.936

GRAVY (calculated)

-0.349

Length

336 amino acids

Sequence
(BLAST)

001: MKVLCSACEA AEASVLCCAD DAALCARCDR EVHAANRLAG KHQRLPLLAP GGQSAAAVSP PKCDICQECD AYFFCLEDRA LLCRSCDVAV HTANAFVSAH
101: RRFLLTGVQV GQELESDDLS REQQPEASPP PPPSKSEPAP PPPPPLYNES DFGWAAGAGA TGSLADWSAV EEEFGSPAPC LAEAAPRATP KRSPRAPPAF
201: GAAGQGRVAG GVMDWPLGEF FRGVSDFNGG GFSFGESGTS KADSSGKLGG SAGGSPYYRS SSEDRDAANE LFGQVPEIQW SVPALPSPPT ASGLHWQHGG
301: HDSNAFVPDI CSPDGGGAGV RCFPTANGAA KRQRNR

Best Arabidopsis Sequence Match ( AT1G78600.1 )
(BLAST)

001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF

Arabidopsis Description

LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.