CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90487
KXG31183
KXG38822

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06040.1	EER90487	AT1G32230.1	11018516
AT1G06040.1	KXG38822	AT1G32230.1	11018516
AT1G06040.1	EER90487	AT1G32230.1	19548978
AT1G06040.1	KXG38822	AT1G32230.1	19548978
AT1G06040.1	KXG31183	AT2G32950.1	11226162
AT2G31380.1	KXG31183	AT2G32950.1	11226162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G347300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	75.0	77.91
TraesCS2B01G367300.2	Wheat	nucleus	75.0	77.91
TraesCS2A01G348900.1	Wheat	nucleus	72.76	76.77
TraesCS2A01G366100.2	Wheat	nucleus	74.25	75.67
Os04t0493000-01	Rice	cytosol	51.87	75.54
EES07119	Sorghum	nucleus	67.16	68.44
GSMUA_Achr9P02360_001	Banana	cytosol	52.99	59.66
KRH24617	Soybean	nucleus	51.49	57.98
KRH29616	Soybean	nucleus	51.12	57.56
PGSC0003DMT400069498	Potato	nucleus	49.25	56.65
KRH23214	Soybean	nucleus	50.37	56.49
GSMUA_Achr6P21320_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	53.36	56.3
Solyc06g073180.2.1	Tomato	nucleus	48.88	56.22
VIT_05s0102g00750.t01	Wine grape	nucleus	49.63	55.65
CDY15558	Canola	nucleus	48.51	54.17
Bra030635.1-P	Field mustard	nucleus	48.51	53.94
CDX86539	Canola	nucleus	48.13	53.53
CDY06194	Canola	nucleus	46.64	53.42
Bra032441.1-P	Field mustard	nucleus	46.27	52.99
CDY09992	Canola	nucleus	46.27	52.77
Bra015469.1-P	Field mustard	nucleus	46.27	51.03
AT1G06040.1	Thale cress	nucleus	47.01	50.81
CDY19093	Canola	nucleus	44.4	49.79
Bra021734.1-P	Field mustard	nucleus	44.03	49.17
AT2G31380.1	Thale cress	nucleus	43.66	49.16
CDY56613	Canola	nucleus	44.4	48.97
CDY15382	Canola	nucleus	44.03	48.76
Bra018249.1-P	Field mustard	nucleus	44.03	48.56
CDY10800	Canola	nucleus	43.28	47.74
KRH10122	Soybean	nucleus	50.37	34.44
EES15831	Sorghum	nucleus	26.12	28.57
OQU82040	Sorghum	nucleus	27.99	28.3
EER97079	Sorghum	cytosol	22.01	27.96
EES02283	Sorghum	nucleus	35.07	26.7
EES17867	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	32.84	26.19
KXG19323	Sorghum	nucleus	36.19	25.87
EES07539	Sorghum	nucleus	27.61	25.08
EER90373	Sorghum	cytosol	26.87	23.61

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	EntrezGene:8073714	UniProt:C5YBE4	EnsemblPlants:EES12431	ProteinID:EES12431
ProteinID:EES12431.1	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009791
GO:GO:0009987	InterPro:IPR000315	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF29
SMART:SM00336	EnsemblPlantsGene:SORBI_3006G131800	unigene:Sbi.15057	UniParc:UPI0001A8764B	RefSeq:XP_002448103.1	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:49608315..49610571

Molecular Weight (calculated)

28303.2 Da

IEP (calculated)

4.699

GRAVY (calculated)

-0.198

Length

268 amino acids

Sequence
(BLAST)

001: MRIQCDACEA AAATVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLALG DATAASASSL PRCDVCQEKP AFIFCVEDRA LFCRDCDEPI HVPGTLSGNH
101: QRYLATGIRV GFSSVCGAGA GAEGLPPPAP PKGSSKPAAV VSAPAAGATK TTTTVKDTLP QEVPSSPFLP PSGWAVEDLL QLSDYESSDK KDSPLGFKEL
201: EWFADIDLFH AHSPAKTTTA EVPELFASPQ PASNAGFYKT NGVARQSKKP RMEVPEDDED YFIVPDLG

Best Arabidopsis Sequence Match ( AT1G06040.1 )
(BLAST)

001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG

Arabidopsis Description

BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.