CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14801
KRH39574
KRH73341
KRH74370
KRH74373

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06040.1	KRH39574	AT1G32230.1	11018516
AT1G06040.1	KRH74370	AT1G32230.1	11018516
AT1G06040.1	KRH74373	AT1G32230.1	11018516
AT1G06040.1	KRH39574	AT1G32230.1	19548978
AT1G06040.1	KRH74370	AT1G32230.1	19548978
AT1G06040.1	KRH74373	AT1G32230.1	19548978
AT1G06040.1	KRH14801	AT2G32950.1	11226162
AT1G06040.1	KRH73341	AT2G32950.1	11226162
AT2G31380.1	KRH14801	AT2G32950.1	11226162
AT2G31380.1	KRH73341	AT2G32950.1	11226162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23214	Soybean	nucleus	59.18	97.07
KRH24617	Soybean	nucleus	50.26	82.77
KRH29616	Soybean	nucleus	49.23	81.09
VIT_05s0102g00750.t01	Wine grape	nucleus	46.17	75.73
Solyc06g073180.2.1	Tomato	nucleus	40.31	67.81
PGSC0003DMT400069498	Potato	nucleus	40.05	67.38
CDY06194	Canola	nucleus	37.24	62.39
Bra032441.1-P	Field mustard	nucleus	36.99	61.97
CDY09992	Canola	nucleus	36.99	61.7
AT1G06040.1	Thale cress	nucleus	39.03	61.69
CDX86539	Canola	nucleus	37.76	61.41
CDY15558	Canola	nucleus	37.24	60.83
Bra015469.1-P	Field mustard	nucleus	37.5	60.49
Bra030635.1-P	Field mustard	nucleus	36.99	60.17
GSMUA_Achr9P02360_001	Banana	cytosol	36.48	60.08
CDY19093	Canola	nucleus	36.48	59.83
Bra021734.1-P	Field mustard	nucleus	36.22	59.17
CDY56613	Canola	nucleus	36.48	58.85
AT2G31380.1	Thale cress	nucleus	35.2	57.98
CDY15382	Canola	nucleus	35.71	57.85
CDY10800	Canola	nucleus	35.71	57.61
Bra018249.1-P	Field mustard	nucleus	35.71	57.61
GSMUA_Achr6P21320_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	35.71	55.12
EES07119	Sorghum	nucleus	35.97	53.61
Zm00001d051018_P002	Maize	extracellular	34.44	53.36
TraesCS6A01G216400.1	Wheat	extracellular	33.42	51.17
TraesCS2A01G348900.1	Wheat	nucleus	32.91	50.79
TraesCS6D01G199200.1	Wheat	extracellular	33.42	50.38
EES12431	Sorghum	nucleus	34.44	50.37
TraesCS2D01G347300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	32.91	50.0
TraesCS6B01G246500.1	Wheat	extracellular	32.91	49.62
TraesCS2A01G366100.2	Wheat	nucleus	33.16	49.43
TraesCS2B01G367300.2	Wheat	nucleus	32.4	49.22
Os02t0606200-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	32.91	47.6
Os04t0493000-01	Rice	cytosol	19.9	42.39
KRH51757	Soybean	nucleus	19.39	31.02
KRH21881	Soybean	nucleus	22.96	30.72
KRH37922	Soybean	nucleus	22.7	30.48
KRH61078	Soybean	nucleus	19.9	29.32
KRH17384	Soybean	nucleus	20.41	28.99
KRH28766	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	14.03	28.5
KRH51476	Soybean	nucleus	16.58	27.9
KRH24373	Soybean	nucleus	14.54	26.89
KRH76689	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	14.03	26.19
KRH29344	Soybean	nucleus	14.03	25.94
KRH27404	Soybean	extracellular, vacuole	24.23	25.4
KRH05902	Soybean	nucleus	21.17	25.38
KRH29378	Soybean	nucleus	17.6	23.96
KRH24393	Soybean	nucleus	12.24	23.41
KRH60788	Soybean	nucleus	17.09	21.0

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	UniProt:A0A0R0FVE5	EMBL:ACUP02009118	EnsemblPlantsGene:GLYMA_15G029500	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315
EnsemblPlants:KRH10122	ProteinID:KRH10122	ProteinID:KRH10122.1	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832
PANTHER:PTHR31832:SF8	SMART:SM00336	UniParc:UPI00023D187F	InterPro:Znf_B-box	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:+:2377565..2381868

Molecular Weight (calculated)

44290.0 Da

IEP (calculated)

8.673

GRAVY (calculated)

-0.461

Length

392 amino acids

Sequence
(BLAST)

001: MWFSSFLSPF LMRHSKVRPN APSDDQSSQL THNPQLDHGG WSRRGREFCE ARRAFLNSYH LSLERKNNVS FKEKLKKSVK EVNEAAMGVV LGMRRGVSKR
101: RVGIKVFRVK MSSHSMVLVT LRCFIPWLNK MKKLLAKRRP SFWCCRRKRR INMKIQCDVC ERAPATVICC ADEAALCAKC DVEVHAANKL ASKHQRLLLQ
201: CLSSKLPTCD ICQDKPAFIF CVEDRALFCQ DCDEPIHSAG SLSANHQRFL ATGIRVASSS NCTKDNEKSH SEPPNRSAQQ VSAKIPPQQV PSFTSSWAVD
301: DLLELTGFES PEKKESLQFG ELEWLTDVGI FGEQFAQEAL AAAEVPQLPE THNSSSVASY KTSKSYMSHK KPRIEVLNDD DDDEYFTVPD LG

Best Arabidopsis Sequence Match ( AT1G06040.1 )
(BLAST)

001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG

Arabidopsis Description

BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.