Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G199200.1 | Wheat | extracellular | 97.66 | 96.15 |
| TraesCS6B01G246500.1 | Wheat | extracellular | 95.7 | 94.23 |
| EES07119 | Sorghum | nucleus | 80.08 | 77.95 |
| Zm00001d051018_P002 | Maize | extracellular | 76.56 | 77.47 |
| TraesCS2A01G348900.1 | Wheat | nucleus | 66.41 | 66.93 |
| TraesCS2A01G366100.2 | Wheat | nucleus | 67.19 | 65.4 |
| VIT_05s0102g00750.t01 | Wine grape | nucleus | 55.86 | 59.83 |
| GSMUA_Achr9P02360_001 | Banana | cytosol | 55.08 | 59.24 |
| CDY15558 | Canola | nucleus | 52.73 | 56.25 |
| PGSC0003DMT400069498 | Potato | nucleus | 51.17 | 56.22 |
| Bra030635.1-P | Field mustard | nucleus | 52.73 | 56.02 |
| CDY06194 | Canola | nucleus | 51.17 | 55.98 |
| GSMUA_Achr6P21320_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 55.47 | 55.91 |
| Solyc06g073180.2.1 | Tomato | nucleus | 50.78 | 55.79 |
| KRH23214 | Soybean | nucleus | 51.95 | 55.65 |
| CDX86539 | Canola | nucleus | 52.34 | 55.6 |
| Bra032441.1-P | Field mustard | nucleus | 50.78 | 55.56 |
| KRH24617 | Soybean | nucleus | 51.56 | 55.46 |
| CDY09992 | Canola | nucleus | 50.78 | 55.32 |
| Bra015469.1-P | Field mustard | nucleus | 52.34 | 55.14 |
| KRH29616 | Soybean | nucleus | 50.78 | 54.62 |
| AT2G31380.1 | Thale cress | nucleus | 50.0 | 53.78 |
| Bra021734.1-P | Field mustard | nucleus | 50.0 | 53.33 |
| CDY19093 | Canola | nucleus | 49.61 | 53.14 |
| CDY15382 | Canola | nucleus | 50.0 | 52.89 |
| AT1G06040.1 | Thale cress | nucleus | 51.17 | 52.82 |
| CDY56613 | Canola | nucleus | 50.0 | 52.67 |
| Bra018249.1-P | Field mustard | nucleus | 49.61 | 52.26 |
| CDY10800 | Canola | nucleus | 49.22 | 51.85 |
| KRH10122 | Soybean | nucleus | 51.17 | 33.42 |
| TraesCS6A01G143900.1 | Wheat | nucleus | 26.17 | 31.31 |
| TraesCS6A01G239300.1 | Wheat | nucleus | 27.73 | 30.08 |
| TraesCS2A01G388500.1 | Wheat | nucleus | 28.52 | 28.29 |
| TraesCS5A01G317100.1 | Wheat | cytosol | 22.66 | 27.49 |
| TraesCS7A01G108400.1 | Wheat | nucleus | 35.94 | 25.63 |
| TraesCS3A01G139300.1 | Wheat | nucleus | 32.42 | 23.78 |
| TraesCS7A01G383400.3 | Wheat | nucleus | 28.12 | 23.0 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G216400.1 | EnsemblPlantsGene:TraesCS6A01G216400 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31832 |
| PANTHER:PTHR31832:SF30 | PFAM:PF00643 | PFscan:PS50119 | SEG:seg | SMART:SM00336 | TIGR:cd00021 |
| MapMan:15.5.1.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:398253165..398254237
Molecular Weight (calculated)
27783.7 Da
IEP (calculated)
5.018
GRAVY (calculated)
-0.265
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDSCGV AAATVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLDAL GAKLPRCDIC QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT
101: GIRVGLGPVS ACAAGDHGAA HDADHHAPPK VSCEPQPAAR AQQVPSPPQF LPQDWAVDEL LQFSDYESSD KLHKDSPLAF KELEWFTADM ELFHDHAPKG
201: GRATMEVPEF FASQAADDAA YYRPSRVAAT AGVRQSKKAR VEIPDDEDFF IVPDLG
101: GIRVGLGPVS ACAAGDHGAA HDADHHAPPK VSCEPQPAAR AQQVPSPPQF LPQDWAVDEL LQFSDYESSD KLHKDSPLAF KELEWFTADM ELFHDHAPKG
201: GRATMEVPEF FASQAADDAA YYRPSRVAAT AGVRQSKKAR VEIPDDEDFF IVPDLG
001: MKIQCDVCEK APATLICCAD EAALCAKCDV EVHAANKLAS KHQRLFLDSL STKFPPCDIC LEKAAFIFCV EDRALLCRDC DEATHAPNTR SANHQRFLAT
101: GIRVALSSTS CNQEVEKNHF DPSNQQSLSK PPTQQPAAPS PLWATDEFFS YSDLDCSNKE KEQLDLGELD WLAEMGLFGD QPDQEALPVA EVPELSFSHL
201: AHAHSYNRPM KSNVPNKKQR LEYRYDDEEE HFLVPDLG
101: GIRVALSSTS CNQEVEKNHF DPSNQQSLSK PPTQQPAAPS PLWATDEFFS YSDLDCSNKE KEQLDLGELD WLAEMGLFGD QPDQEALPVA EVPELSFSHL
201: AHAHSYNRPM KSNVPNKKQR LEYRYDDEEE HFLVPDLG
Arabidopsis Description
BBX25B-box zinc finger protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9SID1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.