Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G347300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 93.92 | 95.74 |
| TraesCS2A01G348900.1 | Wheat | nucleus | 92.4 | 95.67 |
| TraesCS2B01G367300.2 | Wheat | nucleus | 92.78 | 94.57 |
| EES12431 | Sorghum | nucleus | 75.67 | 74.25 |
| Os04t0493000-01 | Rice | cytosol | 51.33 | 73.37 |
| TraesCS6A01G216400.1 | Wheat | extracellular | 65.4 | 67.19 |
| GSMUA_Achr9P02360_001 | Banana | cytosol | 50.95 | 56.3 |
| KRH29616 | Soybean | nucleus | 50.19 | 55.46 |
| KRH24617 | Soybean | nucleus | 50.19 | 55.46 |
| PGSC0003DMT400069498 | Potato | nucleus | 48.29 | 54.51 |
| Solyc06g073180.2.1 | Tomato | nucleus | 48.29 | 54.51 |
| KRH23214 | Soybean | nucleus | 49.05 | 53.97 |
| VIT_05s0102g00750.t01 | Wine grape | nucleus | 48.67 | 53.56 |
| Bra030635.1-P | Field mustard | nucleus | 49.05 | 53.53 |
| CDY15558 | Canola | nucleus | 48.67 | 53.33 |
| CDX86539 | Canola | nucleus | 48.67 | 53.11 |
| GSMUA_Achr6P21320_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 50.57 | 52.36 |
| CDY06194 | Canola | nucleus | 46.39 | 52.14 |
| Bra032441.1-P | Field mustard | nucleus | 46.01 | 51.71 |
| CDY09992 | Canola | nucleus | 46.01 | 51.49 |
| Bra015469.1-P | Field mustard | nucleus | 46.77 | 50.62 |
| AT1G06040.1 | Thale cress | nucleus | 47.15 | 50.0 |
| CDY19093 | Canola | nucleus | 44.11 | 48.54 |
| Bra021734.1-P | Field mustard | nucleus | 43.73 | 47.92 |
| CDY15382 | Canola | nucleus | 43.73 | 47.52 |
| AT2G31380.1 | Thale cress | nucleus | 42.59 | 47.06 |
| CDY56613 | Canola | nucleus | 42.97 | 46.5 |
| Bra018249.1-P | Field mustard | nucleus | 42.97 | 46.5 |
| CDY10800 | Canola | nucleus | 42.21 | 45.68 |
| KRH10122 | Soybean | nucleus | 49.43 | 33.16 |
| TraesCS6A01G239300.1 | Wheat | nucleus | 27.0 | 30.08 |
| TraesCS6A01G143900.1 | Wheat | nucleus | 24.33 | 29.91 |
| TraesCS2A01G388500.1 | Wheat | nucleus | 27.76 | 28.29 |
| TraesCS5A01G317100.1 | Wheat | cytosol | 22.05 | 27.49 |
| TraesCS3A01G139300.1 | Wheat | nucleus | 32.32 | 24.36 |
| TraesCS7A01G108400.1 | Wheat | nucleus | 32.7 | 23.96 |
| TraesCS7A01G383400.3 | Wheat | nucleus | 25.48 | 21.41 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G366100.2 | EnsemblPlantsGene:TraesCS2A01G366100 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31832 |
| PANTHER:PTHR31832:SF29 | PFAM:PF00643 | PFscan:PS50119 | SEG:seg | SMART:SM00336 | TIGR:cd00021 |
| MapMan:15.5.1.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:610710592..610711462
Molecular Weight (calculated)
28366.9 Da
IEP (calculated)
4.578
GRAVY (calculated)
-0.366
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MRIQCDACEG AAATVVCCAD EAALCARCDV QIHAANKLAS KHQRLPLEDA ADAAGLPRCD VCQDKPAFVF CVDDRALFCR DCDDSIHVQG TLSANHQRYI
101: ATGIRVSFSS VCSAHADTHP PPPPTSKPKA PPTVAVHRAE PVSAAAQEVP SSPFLPSSGW AVEDLLQFSD YESNDKQKGS PSPLGFKELE WFADIDLFHE
201: YDDQAPAPKW GRTAAEVPEL FASPQPASNA GFYKTAGARQ SKKARVELPD DDDEDYLLVP DLG
101: ATGIRVSFSS VCSAHADTHP PPPPTSKPKA PPTVAVHRAE PVSAAAQEVP SSPFLPSSGW AVEDLLQFSD YESNDKQKGS PSPLGFKELE WFADIDLFHE
201: YDDQAPAPKW GRTAAEVPEL FASPQPASNA GFYKTAGARQ SKKARVELPD DDDEDYLLVP DLG
001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG
Arabidopsis Description
BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.