Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G31380.1 | CDY12145 | AT2G32950.1 | 11226162 |
| AT2G31380.1 | CDY52540 | AT2G32950.1 | 11226162 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19093 | Canola | nucleus | 97.11 | 98.33 |
| Bra021734.1-P | Field mustard | nucleus | 96.28 | 97.08 |
| CDY56613 | Canola | nucleus | 90.91 | 90.53 |
| CDY10800 | Canola | nucleus | 89.67 | 89.3 |
| AT2G31380.1 | Thale cress | nucleus | 87.6 | 89.08 |
| CDX86539 | Canola | nucleus | 73.14 | 73.44 |
| CDY15558 | Canola | nucleus | 72.73 | 73.33 |
| CDY09992 | Canola | nucleus | 69.01 | 71.06 |
| CDY06194 | Canola | nucleus | 67.77 | 70.09 |
| VIT_05s0102g00750.t01 | Wine grape | nucleus | 60.33 | 61.09 |
| PGSC0003DMT400069498 | Potato | nucleus | 56.61 | 58.8 |
| KRH23214 | Soybean | nucleus | 57.85 | 58.58 |
| KRH24617 | Soybean | nucleus | 57.44 | 58.4 |
| Solyc06g073180.2.1 | Tomato | nucleus | 56.2 | 58.37 |
| KRH29616 | Soybean | nucleus | 57.02 | 57.98 |
| GSMUA_Achr9P02360_001 | Banana | cytosol | 55.37 | 56.3 |
| GSMUA_Achr6P21320_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 56.2 | 53.54 |
| TraesCS6A01G216400.1 | Wheat | extracellular | 52.89 | 50.0 |
| Zm00001d051018_P002 | Maize | extracellular | 51.24 | 49.01 |
| TraesCS6D01G199200.1 | Wheat | extracellular | 52.07 | 48.46 |
| TraesCS6B01G246500.1 | Wheat | extracellular | 52.07 | 48.46 |
| EES07119 | Sorghum | nucleus | 51.65 | 47.53 |
| Os02t0606200-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 50.83 | 45.39 |
| TraesCS2A01G348900.1 | Wheat | nucleus | 47.52 | 45.28 |
| TraesCS2D01G347300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 47.93 | 44.96 |
| TraesCS2B01G367300.2 | Wheat | nucleus | 47.11 | 44.19 |
| EES12431 | Sorghum | nucleus | 48.76 | 44.03 |
| TraesCS2A01G366100.2 | Wheat | nucleus | 47.52 | 43.73 |
| CDX86867 | Canola | nucleus | 27.27 | 41.51 |
| CDX99534 | Canola | nucleus | 26.86 | 40.88 |
| Os04t0493000-01 | Rice | cytosol | 27.27 | 35.87 |
| KRH10122 | Soybean | nucleus | 57.85 | 35.71 |
| CDX82018 | Canola | cytosol | 24.38 | 31.55 |
| CDY11657 | Canola | nucleus | 36.36 | 29.83 |
| CDX87448 | Canola | nucleus | 35.95 | 29.79 |
| CDX72726 | Canola | cytosol | 21.9 | 29.61 |
| CDX88458 | Canola | nucleus | 35.95 | 29.49 |
| CDY12111 | Canola | cytosol | 21.9 | 29.44 |
| CDX90301 | Canola | cytosol | 21.9 | 29.44 |
| CDX79268 | Canola | nucleus | 34.71 | 29.17 |
| CDY69214 | Canola | nucleus | 33.88 | 28.47 |
| CDY41957 | Canola | nucleus | 24.79 | 28.3 |
| CDY14607 | Canola | nucleus | 33.88 | 28.18 |
| CDY26870 | Canola | nucleus | 34.71 | 28.0 |
| CDY39040 | Canola | nucleus | 30.99 | 25.51 |
| CDY42602 | Canola | nucleus | 24.38 | 25.21 |
| CDY12117 | Canola | nucleus | 24.79 | 24.79 |
| CDY13564 | Canola | nucleus | 30.99 | 24.75 |
| CDX90306 | Canola | nucleus | 24.38 | 24.48 |
| CDY22402 | Canola | plastid | 15.7 | 23.6 |
| CDX85903 | Canola | nucleus | 30.99 | 23.51 |
| CDX68124 | Canola | nucleus | 30.99 | 23.51 |
| CDY47514 | Canola | nucleus | 30.58 | 23.05 |
| CDX73178 | Canola | nucleus | 30.17 | 22.67 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | GO:A0A078FR99 | UniProt:A0A078FR99 | EnsemblPlants:CDY15382 | ProteinID:CDY15382 |
| ProteinID:CDY15382.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008270 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00085685001 | InterPro:IPR000315 | PFAM:PF00643 | PFscan:PS50119 |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF8 | SMART:SM00336 | UniParc:UPI0004EDFF6C | InterPro:Znf_B-box | SEG:seg |
Description
BnaC04g42410DBnaC04g42410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR99]
Coordinates
chrLK032054:+:527106..528396
Molecular Weight (calculated)
27008.6 Da
IEP (calculated)
4.487
GRAVY (calculated)
-0.466
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDVCEK APATLICCSD EAALCASCDV EVHAANKLAS KHQRLFLDSL STKFPPCDIC LEKAAFIFCV EDRALLCRDC DEATHAPNTR SANHQRFLAT
101: GIRVALSSTS CSQEVEMNHF DPPNQQILSK PTIQQSAAPS PPWAGDEFFR YSDLECSNKQ KEPLDLGELD WLAEMGFFGD QPDQEALPAA EVPELSVSHL
201: PHVHSYNRPM KSNVSNKKPR LEIRYDDDDD DDEQHFLVPD IG
101: GIRVALSSTS CSQEVEMNHF DPPNQQILSK PTIQQSAAPS PPWAGDEFFR YSDLECSNKQ KEPLDLGELD WLAEMGFFGD QPDQEALPAA EVPELSVSHL
201: PHVHSYNRPM KSNVSNKKPR LEIRYDDDDD DDEQHFLVPD IG
001: MKIQCDVCEK APATLICCAD EAALCAKCDV EVHAANKLAS KHQRLFLDSL STKFPPCDIC LEKAAFIFCV EDRALLCRDC DEATHAPNTR SANHQRFLAT
101: GIRVALSSTS CNQEVEKNHF DPSNQQSLSK PPTQQPAAPS PLWATDEFFS YSDLDCSNKE KEQLDLGELD WLAEMGLFGD QPDQEALPVA EVPELSFSHL
201: AHAHSYNRPM KSNVPNKKQR LEYRYDDEEE HFLVPDLG
101: GIRVALSSTS CNQEVEKNHF DPSNQQSLSK PPTQQPAAPS PLWATDEFFS YSDLDCSNKE KEQLDLGELD WLAEMGLFGD QPDQEALPVA EVPELSFSHL
201: AHAHSYNRPM KSNVPNKKQR LEYRYDDEEE HFLVPDLG
Arabidopsis Description
BBX25B-box zinc finger protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9SID1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.