CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39040	Canola	nucleus	88.12	90.82
CDX85903	Canola	nucleus	86.14	81.82
CDX68124	Canola	nucleus	85.48	81.19
CDY47514	Canola	nucleus	85.48	80.69
CDX73178	Canola	nucleus	84.82	79.81
KRH17384	Soybean	nucleus	47.19	51.81
VIT_18s0001g13520.t01	Wine grape	nucleus	51.16	51.16
Zm00001d017412_P001	Maize	nucleus	23.76	50.7
GSMUA_Achr9P20930_001	Banana	cytosol	30.69	50.0
GSMUA_Achr4P05180_001	Banana	cytosol	33.33	49.75
PGSC0003DMT400009514	Potato	nucleus	48.18	48.99
KRH51757	Soybean	nucleus	39.27	48.57
Solyc04g081020.2.1	Tomato	nucleus	47.85	48.49
GSMUA_Achr11P...	Banana	cytosol	31.02	47.47
GSMUA_Achr11P...	Banana	nucleus	28.71	47.03
KRH61078	Soybean	nucleus	40.59	46.24
CDY41957	Canola	nucleus	32.34	46.23
CDY12117	Canola	nucleus	35.97	45.04
CDY42602	Canola	nucleus	34.65	44.87
CDX90306	Canola	nucleus	35.31	44.4
KRH05902	Soybean	nucleus	47.19	43.73
PGSC0003DMT400075652	Potato	nucleus	47.19	43.33
Solyc12g089240.1.1	Tomato	nucleus	46.86	43.16
TraesCS6A01G239300.1	Wheat	nucleus	33.0	42.37
TraesCS6B01G285200.1	Wheat	nucleus	33.0	42.02
TraesCS6D01G221700.1	Wheat	nucleus	32.67	41.6
GSMUA_AchrUn_...	Banana	nucleus	37.62	41.01
GSMUA_Achr11P...	Banana	nucleus	35.31	40.84
Os04t0540200-01	Rice	nucleus	32.67	39.6
Zm00001d025957_P001	Maize	nucleus	33.0	39.06
CDX99534	Canola	nucleus	20.46	38.99
CDX86867	Canola	nucleus	20.46	38.99
Os02t0646200-01	Rice	nucleus	34.32	38.66
TraesCS2A01G388500.1	Wheat	nucleus	32.67	38.37
Zm00001d002806_P001	Maize	nucleus	32.67	38.37
Zm00001d051309_P001	Maize	nucleus	34.65	37.91
OQU82040	Sorghum	nucleus	33.0	37.74
EES07539	Sorghum	nucleus	36.63	37.63
TraesCS2D01G386300.1	Wheat	nucleus	32.34	37.4
TraesCS2B01G406600.2	Wheat	nucleus	31.68	36.23
CDX86539	Canola	nucleus	28.38	35.68
CDY06194	Canola	nucleus	27.39	35.47
CDY15558	Canola	nucleus	27.72	35.0
CDY09992	Canola	nucleus	26.73	34.47
HORVU2Hr1G092460.9	Barley	cytosol, mitochondrion, nucleus	32.34	34.39
HORVU7Hr1G091180.1	Barley	nucleus	31.02	34.18
TraesCS7D01G379900.1	Wheat	nucleus	31.35	33.33
CDY19093	Canola	nucleus	25.41	32.22
Os06t0713000-01	Rice	nucleus	32.67	32.14
Zm00001d036418_P001	Maize	nucleus	27.72	31.23
TraesCS7B01G286300.1	Wheat	nucleus	32.01	31.19
CDY15382	Canola	nucleus	24.75	30.99
TraesCS7A01G383400.3	Wheat	nucleus	31.68	30.67
CDY56613	Canola	nucleus	24.09	30.04
CDY12111	Canola	cytosol	17.82	30.0
CDX90301	Canola	cytosol	17.82	30.0
CDX82018	Canola	cytosol	18.48	29.95
CDY10800	Canola	nucleus	23.76	29.63
CDX79268	Canola	nucleus	28.05	29.51
EER90373	Sorghum	cytosol	29.7	29.51
GSMUA_Achr1P07740_001	Banana	nucleus	37.95	29.34
CDX87448	Canola	nucleus	28.05	29.11
CDX72726	Canola	cytosol	17.16	29.05
CDY14607	Canola	nucleus	27.72	28.87
CDY11657	Canola	nucleus	27.72	28.47
CDX88458	Canola	nucleus	27.72	28.47
CDY69214	Canola	nucleus	27.06	28.47
CDY26870	Canola	nucleus	28.05	28.33
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	33.66	26.63
Zm00001d014765_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	30.69	26.2
CDY22402	Canola	plastid	12.21	22.98

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	GO:A0A078FKX1	UniProt:A0A078FKX1	EnsemblPlants:CDY13564	ProteinID:CDY13564
ProteinID:CDY13564.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008270	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00077931001	InterPro:IPR000315	PFAM:PF00643	PFscan:PS50119
PANTHER:PTHR31832	PANTHER:PTHR31832:SF6	SMART:SM00336	UniParc:UPI0004EE15CA	InterPro:Znf_B-box	SEG:seg

Description

BnaC02g23750DBnaC02g23750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FKX1]

Coordinates

chrLK032036:-:438756..440212

Molecular Weight (calculated)

33368.9 Da

IEP (calculated)

7.142

GRAVY (calculated)

-0.595

Length

303 amino acids

Sequence
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH RVHHANKLAS KHLRFSLLNP FSSNNSSPIC DICQEKKALL FCQQDRAILC KDCDSSIHSA NEQVKKHDRF
101: LLTGVKLSAT SSVYKPTSES FSSSQDCSVP GPRSSKKPLS APQSNSSKIQ LTSKIGGDAA VNQLGSTSTI SEYLIDALPG WHVEDFLDSS LPPFGFSKSG
201: DDDGVSLQSK NMGLWVPQIP QTLPSSYTNQ YFSQDNNNIQ FGMYNNKETS PEVQMYAPIQ NMKQQGQNKR WYDDDGGFTV PQITAASSHP TTLPSNKRSK
301: SFW

Best Arabidopsis Sequence Match ( AT1G75540.1 )
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W

Arabidopsis Description

BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.