Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P20130_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75540.1 | GSMUA_Achr3P20130_001 | AT2G32950.1 | 17965270 |
| AT1G75540.1 | GSMUA_AchrUn_... | AT2G32950.1 | 17965270 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 52.55 | 74.1 |
| GSMUA_Achr9P20930_001 | Banana | cytosol | 34.69 | 73.12 |
| GSMUA_Achr4P05180_001 | Banana | cytosol | 31.38 | 60.59 |
| GSMUA_Achr11P... | Banana | nucleus | 39.8 | 59.54 |
| GSMUA_Achr11P... | Banana | cytosol | 29.08 | 57.58 |
| GSMUA_Achr11P... | Banana | nucleus | 26.02 | 55.14 |
| GSMUA_Achr8P16260_001 | Banana | endoplasmic reticulum | 16.07 | 45.0 |
| CDY41957 | Canola | nucleus | 23.21 | 42.92 |
| Solyc01g110180.2.1 | Tomato | nucleus | 21.43 | 41.38 |
| KRH51757 | Soybean | nucleus | 25.77 | 41.22 |
| KRH17384 | Soybean | nucleus | 28.83 | 40.94 |
| CDY42602 | Canola | nucleus | 24.23 | 40.6 |
| VIT_18s0001g13520.t01 | Wine grape | nucleus | 31.38 | 40.59 |
| Bra011879.1-P | Field mustard | nucleus | 24.74 | 40.59 |
| Solyc04g081020.2.1 | Tomato | nucleus | 30.36 | 39.8 |
| CDY12117 | Canola | nucleus | 24.49 | 39.67 |
| CDX90306 | Canola | nucleus | 24.23 | 39.42 |
| Bra010713.1-P | Field mustard | nucleus | 24.23 | 39.42 |
| PGSC0003DMT400009514 | Potato | nucleus | 29.85 | 39.26 |
| AT4G39070.1 | Thale cress | cytosol | 23.72 | 38.43 |
| CDY13564 | Canola | nucleus | 29.34 | 37.95 |
| KRH61078 | Soybean | nucleus | 25.51 | 37.59 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 17.35 | 37.57 |
| Bra008204.1-P | Field mustard | nucleus | 28.83 | 37.42 |
| KRH51476 | Soybean | nucleus | 22.19 | 37.34 |
| CDY39040 | Canola | nucleus | 27.81 | 37.07 |
| GSMUA_Achr11P... | Banana | nucleus | 18.37 | 36.36 |
| VIT_03s0038g00340.t01 | Wine grape | nucleus | 27.81 | 36.09 |
| CDX85903 | Canola | nucleus | 29.34 | 36.05 |
| CDX73178 | Canola | nucleus | 29.34 | 35.71 |
| CDY47514 | Canola | nucleus | 29.08 | 35.51 |
| Bra015835.1-P | Field mustard | nucleus | 29.08 | 35.51 |
| CDX68124 | Canola | nucleus | 28.83 | 35.42 |
| Bra003748.1-P | Field mustard | nucleus | 28.57 | 35.11 |
| GSMUA_Achr4P04990_001 | Banana | extracellular, golgi | 34.18 | 34.99 |
| PGSC0003DMT400079507 | Potato | nucleus | 22.19 | 34.52 |
| GSMUA_Achr3P16700_001 | Banana | nucleus | 17.09 | 34.36 |
| AT1G75540.1 | Thale cress | nucleus | 28.57 | 33.84 |
| Solyc12g089240.1.1 | Tomato | nucleus | 28.32 | 33.74 |
| KRH29378 | Soybean | nucleus | 24.74 | 33.68 |
| KRH05902 | Soybean | nucleus | 28.06 | 33.64 |
| GSMUA_Achr9P02360_001 | Banana | cytosol | 20.41 | 33.61 |
| PGSC0003DMT400075652 | Potato | nucleus | 28.06 | 33.33 |
| KRH24393 | Soybean | nucleus | 16.58 | 31.71 |
| GSMUA_Achr6P21320_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 19.9 | 30.71 |
| GSMUA_Achr6P14750_001 | Banana | nucleus | 22.45 | 29.14 |
| GSMUA_Achr6P21590_001 | Banana | nucleus | 21.43 | 28.0 |
| KRH60788 | Soybean | nucleus | 22.7 | 27.9 |
| GSMUA_Achr10P... | Banana | cytosol | 14.54 | 27.4 |
| GSMUA_Achr1P07770_001 | Banana | cytosol | 14.54 | 23.55 |
| GSMUA_Achr6P17960_001 | Banana | cytosol | 8.93 | 16.36 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004843 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006464 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0046872 |
| GO:GO:0071108 | GO:GO:1990380 | EnsemblPlantsGene:GSMUA_Achr1G07740_001 | EnsemblPlants:GSMUA_Achr1P07740_001 | EnsemblPlants:GSMUA_Achr1T07740_001 | InterPro:IPR000315 |
| UniProt:M0RXY2 | InterPro:MINDY_domain | PFAM:PF00643 | PFAM:PF04424 | PFscan:PS50119 | PANTHER:PTHR31832 |
| PANTHER:PTHR31832:SF6 | SMART:SM00336 | UniParc:UPI000295E797 | InterPro:Znf_B-box | SEG:seg | : |
Description
Putative Probable salt tolerance-like protein At1g75540 [Source:GMGC_GENE;Acc:GSMUA_Achr1G07740_001]
Coordinates
chr1:-:5963559..5966523
Molecular Weight (calculated)
43054.6 Da
IEP (calculated)
5.376
GRAVY (calculated)
-0.263
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MRILCDVCGE EEASVFCCAD EAALCGACDR RVHRANKVAG KHRRLSLSDS SAQSRPACDI CQEKRGYLFC HEDRAILCRD CDASVHSASH LTMKHNRFLL
101: TGARLSAAPI PCSPSPESEE AADKATTKNT VTTADQTKAS VADGSSPIAS TSAATPTTAT SSISEYLINM CPGWRVEDLL VDDAAVVAME DFSKGDDLPP
201: FLGADLEAVA EKFPVWAPQV PQFPPPATPA AATTTARYQP WNTSKEAGRE RWSEDLFAVP QISPASTPSK RPRHTPWNHL NLSLDVSEIS LQKLLSLVAE
301: RLIDPNCNVQ DDGHVNNRQQ NISEAIDLLS RLAAGIDVNV HFRKINDFEF TQEYTIFNLL DIGLHHGWIV DPQVTLCDHL IHLSFWHSLY PL
101: TGARLSAAPI PCSPSPESEE AADKATTKNT VTTADQTKAS VADGSSPIAS TSAATPTTAT SSISEYLINM CPGWRVEDLL VDDAAVVAME DFSKGDDLPP
201: FLGADLEAVA EKFPVWAPQV PQFPPPATPA AATTTARYQP WNTSKEAGRE RWSEDLFAVP QISPASTPSK RPRHTPWNHL NLSLDVSEIS LQKLLSLVAE
301: RLIDPNCNVQ DDGHVNNRQQ NISEAIDLLS RLAAGIDVNV HFRKINDFEF TQEYTIFNLL DIGLHHGWIV DPQVTLCDHL IHLSFWHSLY PL
001: MKIWCAVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TFKDAPLCDI CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS
Arabidopsis Description
BBX20B-box zinc finger protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q0IGM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.