Factsheet for GSMUA_Achr6P21590_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G023060.1	Barley	cytosol, mitochondrion, nucleus	19.33	80.56
GSMUA_Achr6P14750_001	Banana	nucleus	65.33	64.9
GSMUA_Achr8P16260_001	Banana	endoplasmic reticulum	28.0	60.0
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	31.33	51.93
VIT_19s0014g00350.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	50.0	51.19
Solyc07g062160.2.1	Tomato	nucleus	50.67	51.01
PGSC0003DMT400018196	Potato	nucleus	50.33	50.67
KRH37922	Soybean	nucleus	48.67	50.0
KRH21881	Soybean	nucleus	48.33	49.49
Solyc12g005420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	46.33	49.29
GSMUA_Achr11P...	Banana	nucleus	32.33	48.99
Bra035051.1-P	Field mustard	nucleus	47.67	48.97
CDX87448	Canola	nucleus	47.67	48.97
CDX79268	Canola	nucleus	46.67	48.61
CDX88458	Canola	nucleus	47.67	48.47
Bra003640.1-P	Field mustard	nucleus	46.33	48.26
TraesCS7B01G006400.1	Wheat	nucleus	54.33	48.22
PGSC0003DMT400048964	Potato	nucleus	48.0	48.16
CDY11657	Canola	nucleus	47.33	48.14
CDY69214	Canola	nucleus	45.67	47.57
Bra008371.1-P	Field mustard	nucleus	46.0	47.42
TraesCS7A01G108400.1	Wheat	nucleus	56.67	47.35
Os06t0152200-01	Rice	nucleus	56.33	46.94
TraesCS7D01G103300.1	Wheat	nucleus	56.67	46.83
CDY14607	Canola	nucleus	45.33	46.74
CDY26870	Canola	nucleus	46.0	46.0
AT1G78600.2	Thale cress	nucleus	47.33	44.51
GSMUA_Achr3P16700_001	Banana	nucleus	28.0	43.08
KXG19323	Sorghum	nucleus	53.67	42.93
HORVU7Hr1G023100.2	Barley	plastid	55.33	41.29
Zm00001d036214_P001	Maize	nucleus	52.67	40.93
GSMUA_Achr9P20930_001	Banana	cytosol	24.33	39.25
GSMUA_Achr4P05180_001	Banana	cytosol	26.0	38.42
Zm00001d045323_P004	Maize	nucleus	54.0	38.39
GSMUA_Achr11P...	Banana	nucleus	23.33	37.84
KRH27404	Soybean	extracellular, vacuole	47.0	37.7
GSMUA_Achr9P02360_001	Banana	cytosol	29.0	36.55
GSMUA_Achr11P...	Banana	cytosol	23.67	35.86
GSMUA_Achr6P21320_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	28.0	33.07
GSMUA_AchrUn_...	Banana	nucleus	27.67	29.86
GSMUA_Achr11P...	Banana	nucleus	26.0	29.77
GSMUA_Achr10P...	Banana	cytosol	20.33	29.33
GSMUA_Achr1P07770_001	Banana	cytosol	19.33	23.97
GSMUA_Achr1P07740_001	Banana	nucleus	28.0	21.43
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	26.0	20.37
GSMUA_Achr6P17960_001	Banana	cytosol	12.0	16.82

Protein Annotations

EnsemblPlants:GSMUA_Achr6P21590_001	EnsemblPlants:GSMUA_Achr6T21590_001	EnsemblPlantsGene:GSMUA_Achr6G21590_001	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	GO:GO:0046872	InterPro:IPR000315
InterPro:Znf_B-box	PANTHER:PTHR31832	PANTHER:PTHR31832:SF31	PFAM:PF00643	PFscan:PS50119	SEG:seg
SMART:SM00336	UniParc:UPI000296BDD9	UniProt:M0T907	MapMan:15.5.1.1	:	:

Description

Putative Probable salt tolerance-like protein At1g78600 [Source:GMGC_GENE;Acc:GSMUA_Achr6G21590_001]

Coordinates

chr6:-:18036771..18041666

Molecular Weight (calculated)

31778.9 Da

IEP (calculated)

6.440

GRAVY (calculated)

-0.247

Length

300 amino acids

Sequence
(BLAST)

001: MKIQCNACEA AEAAVLCCAD EAALCWACDE KVHAANRLAG KHQRVPLLSD DGGGPVSGSS SSTASGVPKC DICQEASGYF FCLEDRALLC RKCDLSIHTA
101: NSYVSAHQRF LLTGVRVGLE SAESVPVANQ QLHAAGKAVL SPSKQLRLMS STETNAVSSS QIARVGGSVA SMAPASGFSM SGSAPGWPFD EFFGFPDINQ
201: NGFAEHNASK ADSGKLGSHG SSPPYHSVDS DLDAYECVGQ HPEYYWAVPE IPSPPTASGL GWQRNLLHPA SDDAAFVPDL CSSSHHVTTS FRSHRHHRRC

Best Arabidopsis Sequence Match ( AT1G78600.1 )
(BLAST)

001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF

Arabidopsis Description

LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.