CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21881	Soybean	nucleus	76.03	75.77
HORVU7Hr1G023060.1	Barley	cytosol, mitochondrion, nucleus	17.81	72.22
VIT_19s0014g00350.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	62.33	62.12
KRH27404	Soybean	extracellular, vacuole	74.66	58.29
GSMUA_Achr6P21590_001	Banana	nucleus	50.0	48.67
GSMUA_Achr6P14750_001	Banana	nucleus	46.58	45.03
KRH24617	Soybean	nucleus	32.88	40.34
KRH29616	Soybean	nucleus	32.88	40.34
Os06t0152200-01	Rice	nucleus	48.97	39.72
TraesCS7B01G006400.1	Wheat	nucleus	45.89	39.65
TraesCS7A01G108400.1	Wheat	nucleus	46.92	38.16
KXG19323	Sorghum	nucleus	48.97	38.13
TraesCS7D01G103300.1	Wheat	nucleus	47.26	38.02
KRH23214	Soybean	nucleus	30.82	37.66
Zm00001d036214_P001	Maize	nucleus	47.6	36.01
Zm00001d045323_P004	Maize	nucleus	48.97	33.89
KRH51757	Soybean	nucleus	28.08	33.47
HORVU7Hr1G023100.2	Barley	plastid	45.55	33.08
KRH61078	Soybean	nucleus	29.11	31.95
KRH17384	Soybean	nucleus	30.14	31.88
KRH24373	Soybean	nucleus	22.95	31.6
KRH51476	Soybean	nucleus	24.66	30.9
KRH29344	Soybean	nucleus	22.26	30.66
KRH28766	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	20.21	30.57
KRH29378	Soybean	nucleus	28.77	29.17
KRH76689	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	20.89	29.05
KRH05902	Soybean	nucleus	29.79	26.61
KRH24393	Soybean	nucleus	18.49	26.34
KRH60788	Soybean	nucleus	26.37	24.14
KRH10122	Soybean	nucleus	30.48	22.7

Protein Annotations

EntrezGene:100808889	MapMan:15.5.1.1	Gene3D:3.30.40.200	UniProt:A0A0R4J428	EMBL:ACUP02005564	EnsemblPlantsGene:GLYMA_09G099000
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270
GO:GO:0046872	InterPro:IPR000315	EnsemblPlants:KRH37922	ProteinID:KRH37922	ProteinID:KRH37922.1	PFAM:PF00643
PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF31	SMART:SM00336	UniParc:UPI000189D241	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:17582190..17585828

Molecular Weight (calculated)

31991.3 Da

IEP (calculated)

5.347

GRAVY (calculated)

-0.464

Length

292 amino acids

Sequence
(BLAST)

001: MKIQCNVCEA AEAKVLCCAD EAALCWECDE KVHAANKLAS KHQRVPLSLS ASHMPKCDIC QEMVGYFFCL EDRALLCRNC DVSIHTANAC VSDHQRFLLT
101: GVRVGLEATE RGASSSSVKS QSGEKMSDAK SSSISRNVSS LPQPSNANEV LPLQMQGVEE FPPSNFSGYT SGNVSQWPIE EFLGLNELSQ YYNYMDGSSK
201: ADSGKLGDSD SSVLRSGEED MDDDGFLGRV PDSSWTVPQI PSPPTASGLY WPKVPQYTSD SAMSVPDICF SHVRQPHHAQ HNSNVSKRRR QL

Best Arabidopsis Sequence Match ( AT1G78600.1 )
(BLAST)

001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF

Arabidopsis Description

LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.