Factsheet for VIT_19s0014g00350.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol, golgi, plasma membrane, vacuole, endoplasmic reticulum, plastid

Predictor Summary:

nucleus 4
cytosol 1
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G023060.1	Barley	cytosol, mitochondrion, nucleus	17.75	72.22
Solyc07g062160.2.1	Tomato	nucleus	67.92	66.78
PGSC0003DMT400018196	Potato	nucleus	67.92	66.78
KRH37922	Soybean	nucleus	62.12	62.33
Solyc12g005420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	57.0	59.22
PGSC0003DMT400048964	Potato	nucleus	60.41	59.2
CDX79268	Canola	nucleus	54.95	55.9
Bra035051.1-P	Field mustard	nucleus	55.29	55.48
CDX87448	Canola	nucleus	55.29	55.48
Bra008371.1-P	Field mustard	nucleus	54.61	54.98
CDY14607	Canola	nucleus	54.27	54.64
CDX88458	Canola	nucleus	54.61	54.24
CDY11657	Canola	nucleus	54.27	53.9
Bra003640.1-P	Field mustard	nucleus	52.9	53.82
CDY69214	Canola	nucleus	52.9	53.82
CDY26870	Canola	nucleus	54.61	53.33
AT1G78600.2	Thale cress	nucleus	55.29	50.78
GSMUA_Achr6P21590_001	Banana	nucleus	51.19	50.0
GSMUA_Achr6P14750_001	Banana	nucleus	49.83	48.34
VIT_18s0089g01280.t01	Wine grape	nucleus	31.74	45.37
TraesCS7B01G006400.1	Wheat	nucleus	47.44	41.12
Os06t0152200-01	Rice	nucleus	49.83	40.56
TraesCS7A01G108400.1	Wheat	nucleus	48.81	39.83
TraesCS7D01G103300.1	Wheat	nucleus	48.81	39.39
VIT_05s0102g00750.t01	Wine grape	nucleus	31.74	38.91
KXG19323	Sorghum	nucleus	49.15	38.4
Zm00001d036214_P001	Maize	nucleus	47.78	36.27
Zm00001d045323_P004	Maize	nucleus	49.83	34.6
HORVU7Hr1G023100.2	Barley	plastid	47.1	34.33
VIT_04s0023g03030.t01	Wine grape	cytosol	20.14	32.07
VIT_03s0038g00690.t01	Wine grape	cytosol	20.82	29.05
VIT_18s0001g13520.t01	Wine grape	nucleus	30.03	29.04
VIT_03s0038g00340.t01	Wine grape	nucleus	27.3	26.49

Protein Annotations

EntrezGene:100260711	wikigene:100260711	MapMan:15.5.1.1	Gene3D:3.30.40.200	ProteinID:CBI20111	ProteinID:CBI20111.3
UniProt:E0CS12	EMBL:FN595229	GO:GO:0000989	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009641	GO:GO:0009658	GO:GO:0009718
GO:GO:0009791	GO:GO:0009987	GO:GO:0015995	GO:GO:0016043	GO:GO:0016607	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000315	EntrezGene:LOC100260711	wikigene:LOC100260711	PFAM:PF00643	PFscan:PS50119
PANTHER:PTHR31832	PANTHER:PTHR31832:SF31	SMART:SM00336	SUPFAM:SSF57845	UniParc:UPI00015C79C3	ArrayExpress:VIT_19s0014g00350
EnsemblPlantsGene:VIT_19s0014g00350	EnsemblPlants:VIT_19s0014g00350.t01	unigene:Vvi.15457	RefSeq:XP_002283666	RefSeq:XP_002283666.1	InterPro:Znf_B-box

Description

No Description!

Coordinates

chr19:+:357069..372484

Molecular Weight (calculated)

31684.1 Da

IEP (calculated)

4.867

GRAVY (calculated)

-0.332

Length

293 amino acids

Sequence
(BLAST)

001: MKIQCNVCEA AEANVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSTS SSQMPKCDIC QETVGYFFCL EDRALLCRKC DVSIHTANTY VSAHQRFLLT
101: GVKVGLEPTQ PGSSSSMGKS NLVGKHSETE SPSASRRGAP MPLTCDYNKT LSIQAGGAGD FVPTKVSFAG GSGSTESIPQ WHIDELFGLN EFNQTYDCMD
201: NGTSKADIGK LGDSDCSPTL RAADEELNFD DCLGQVPETT WMVPQISSPP TASGLYWPKS SQISSDTSVF VPDICYSPVQ MQNESATKCR RQF

Best Arabidopsis Sequence Match ( AT1G78600.1 )
(BLAST)

001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF

Arabidopsis Description

LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.