Factsheet for VIT_03s0038g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0023g03030.t01	Wine grape	cytosol	68.1	77.72
KRH29344	Soybean	nucleus	71.9	71.23
KRH24373	Soybean	nucleus	71.43	70.75
Bra010718.1-P	Field mustard	cytosol	60.48	70.56
PGSC0003DMT400008044	Potato	cytosol	70.95	70.28
CDX90301	Canola	cytosol	60.0	70.0
CDY12111	Canola	cytosol	59.52	69.44
CDX72726	Canola	cytosol	59.05	69.27
Bra031180.1-P	Field mustard	cytosol	61.9	69.15
CDX82018	Canola	cytosol	61.43	68.98
AT2G21320.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	55.71	68.02
Bra033588.1-P	Field mustard	cytosol	58.57	67.58
Os09t0527900-01	Rice	cytosol	64.76	64.45
Zm00001d021278_P001	Maize	cytosol	62.38	63.59
EER97079	Sorghum	cytosol	62.38	62.09
Solyc01g110370.2.1	Tomato	cytosol	70.48	61.41
TraesCS5A01G317100.1	Wheat	cytosol	60.95	60.66
TraesCS5B01G317700.1	Wheat	cytosol	60.95	60.66
CDY22402	Canola	plastid	46.19	60.25
TraesCS5D01G323400.1	Wheat	cytosol	60.48	60.19
AT4G38960.3	Thale cress	cytosol	60.48	56.19
HORVU5Hr1G081190.1	Barley	cytosol, nucleus, plastid	60.95	46.55
Zm00001d006198_P001	Maize	cytosol	54.29	44.88
GSMUA_Achr6P17960_001	Banana	cytosol	37.62	36.92
VIT_05s0102g00750.t01	Wine grape	nucleus	27.14	23.85
VIT_18s0089g01280.t01	Wine grape	nucleus	22.86	23.41
VIT_19s0014g00350.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	29.05	20.82
VIT_18s0001g13520.t01	Wine grape	nucleus	27.14	18.81
VIT_03s0038g00340.t01	Wine grape	nucleus	24.76	17.22

Protein Annotations

EntrezGene:100257242	wikigene:100257242	MapMan:15.5.1.1	Gene3D:3.30.40.200	ProteinID:CBI37988	ProteinID:CBI37988.3
UniProt:D7U5G9	EMBL:FN596508	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640
GO:GO:0009791	GO:GO:0009987	InterPro:IPR000315	EntrezGene:LOC100257242	wikigene:LOC100257242	PFAM:PF00643
PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF5	SMART:SM00336	TIGR:TC56585	UniParc:UPI00015C8AB9
ArrayExpress:VIT_03s0038g00690	EnsemblPlantsGene:VIT_03s0038g00690	EnsemblPlants:VIT_03s0038g00690.t01	unigene:Vvi.15362	RefSeq:XP_002267957	RefSeq:XP_002267957.1
InterPro:Znf_B-box	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:594846..598517

Molecular Weight (calculated)

23372.8 Da

IEP (calculated)

6.409

GRAVY (calculated)

-0.596

Length

210 amino acids

Sequence
(BLAST)

001: MRTLCDACES AAAILFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLADP SDVPRCDICE NAPAFFYCEV DGTSLCLQCD MIVHVGGKRT HGRYLLLRQR
101: VEFPGDKPGR LEELRLQSGE PGEARREQNW PPMMTLRETQ PNHMASSVPM LENNTHGDGK MDNKLIDLNA RPQRVHGQTS NNQSMDVHSG TNHESESVVP
201: VGSFKREPEK

Best Arabidopsis Sequence Match ( AT4G38960.1 )
(BLAST)

001: MRILCDACEN AAAIIFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK

Arabidopsis Description

B-box type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.