Factsheet for GSMUA_Achr6P17960_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g084420.2.1	Tomato	cytosol	20.09	48.86
VIT_04s0023g03030.t01	Wine grape	cytosol	35.05	40.76
GSMUA_Achr10P...	Banana	cytosol	36.92	37.98
PGSC0003DMT400009328	Potato	cytosol	32.24	37.91
KRH28766	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	34.11	37.82
VIT_03s0038g00690.t01	Wine grape	cytosol	36.92	37.62
KRH24373	Soybean	nucleus	35.98	36.32
KRH29344	Soybean	nucleus	35.05	35.38
PGSC0003DMT400008044	Potato	cytosol	34.58	34.91
KRH76689	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	33.64	34.29
Solyc01g110370.2.1	Tomato	cytosol	34.11	30.29
GSMUA_Achr1P07770_001	Banana	cytosol	34.11	30.17
GSMUA_Achr8P16260_001	Banana	endoplasmic reticulum	14.95	22.86
GSMUA_Achr9P20930_001	Banana	cytosol	15.89	18.28
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	15.42	18.23
GSMUA_Achr3P16700_001	Banana	nucleus	15.89	17.44
GSMUA_Achr11P...	Banana	nucleus	15.89	17.17
GSMUA_Achr9P02360_001	Banana	cytosol	18.69	16.81
GSMUA_Achr4P05180_001	Banana	cytosol	15.89	16.75
GSMUA_Achr11P...	Banana	nucleus	14.02	16.22
GSMUA_Achr11P...	Banana	cytosol	14.02	15.15
GSMUA_Achr6P21320_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	17.29	14.57
GSMUA_Achr11P...	Banana	nucleus	16.82	13.74
GSMUA_AchrUn_...	Banana	nucleus	17.29	13.31
GSMUA_Achr6P21590_001	Banana	nucleus	16.82	12.0
GSMUA_Achr6P14750_001	Banana	nucleus	16.82	11.92
GSMUA_Achr1P07740_001	Banana	nucleus	16.36	8.93
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	15.89	8.88

Protein Annotations

EnsemblPlants:GSMUA_Achr6P17960_001	EnsemblPlants:GSMUA_Achr6T17960_001	EnsemblPlantsGene:GSMUA_Achr6G17960_001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box	PANTHER:PTHR31832
PANTHER:PTHR31832:SF5	PFAM:PF00643	SEG:seg	SMART:SM00336	UniParc:UPI00029638B6	UniProt:M0T7Z4
MapMan:15.5.1.1	:	:	:	:	:

Description

Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G17960_001]

Coordinates

chr6:-:12099740..12101712

Molecular Weight (calculated)

24730.9 Da

IEP (calculated)

6.024

GRAVY (calculated)

-0.214

Length

214 amino acids

Sequence
(BLAST)

001: MDLDVYVYIV HTCNKLASRH IRVQIAEPSA VGQCDICEKS PAFFFCVIDG SSLCMECDVI VHVGGKRSNE RYLLLRQKIE FLEDEPGHFE DLMLQHHDNT
101: EDRLENNMVL HKKQFLENIR EKMDRCRMPP VSISKLDINR NRLGPTLFDL NARPHRVQDH ITDSSQVVPL VVLSFELLFL SNLLPSNELN LLDNPGIYLN
201: CSRLPCSYEF CLNK

Best Arabidopsis Sequence Match ( AT4G38960.3 )
(BLAST)

001: MRILCDACEN AAAIIFCAAD EAALCRPCDE KALHMRLDIS KCSESVKRVQ IVETSSLIWW IKMGTFCLQS LHLVVHMCNK LASRHVRVGL AEPSNAPCCD
101: ICENAPAFFY CEIDGSSLCL QCDMVVHVGG KRTHGRFLLL RQRIEFPGDK PKENNTRDNL QNQRVSTNGN GEANGKIDDE MIDLNANPQR VHEPSSNNNG
201: IDVNNENNHE PAGLVPVGPF KRESEK

Arabidopsis Description

B-box type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.