Factsheet for GSMUA_Achr8P16260_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	74.29	57.46
GSMUA_Achr11P...	Banana	nucleus	70.71	50.0
GSMUA_Achr3P16700_001	Banana	nucleus	57.86	41.54
GSMUA_Achr9P20930_001	Banana	cytosol	43.57	32.8
GSMUA_Achr11P...	Banana	nucleus	42.14	31.89
GSMUA_Achr11P...	Banana	cytosol	44.29	31.31
GSMUA_Achr4P05180_001	Banana	cytosol	42.86	29.56
GSMUA_Achr6P21590_001	Banana	nucleus	60.0	28.0
GSMUA_Achr9P02360_001	Banana	cytosol	47.14	27.73
GSMUA_Achr6P14750_001	Banana	nucleus	56.43	26.16
GSMUA_Achr10P...	Banana	cytosol	37.14	25.0
GSMUA_Achr6P21320_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	44.29	24.41
GSMUA_Achr11P...	Banana	nucleus	43.57	23.28
GSMUA_Achr1P07770_001	Banana	cytosol	39.29	22.73
GSMUA_AchrUn_...	Banana	nucleus	45.0	22.66
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	44.29	16.19
GSMUA_Achr1P07740_001	Banana	nucleus	45.0	16.07
GSMUA_Achr6P17960_001	Banana	cytosol	22.86	14.95

Protein Annotations

EnsemblPlants:GSMUA_Achr8P16260_001	EnsemblPlants:GSMUA_Achr8T16260_001	EnsemblPlantsGene:GSMUA_Achr8G16260_001	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31832	PFAM:PF00643	PFscan:PS50119	SEG:seg	SMART:SM00336	SUPFAM:SSF57845
UniParc:UPI000294F347	UniProt:M0TQX9	MapMan:15.5.1.1	:	:	:

Description

Probable salt tolerance-like protein At1g78600 [Source:GMGC_GENE;Acc:GSMUA_Achr8G16260_001]

Coordinates

chr8:+:14067854..14070383

Molecular Weight (calculated)

15628.6 Da

IEP (calculated)

7.864

GRAVY (calculated)

-0.351

Length

140 amino acids

Sequence
(BLAST)

001: MKILCDVCEG AVAAVLCCAD EAALCWGCDE KVHAANKLAG KHQRVPLLPT NSNSRSSSSS QTPTCDICQE KVRYFFCLED RALLCRQCDV AVHTATPYLS
101: SHRRFLITGV RVPLQHNYLT KDGNNNNHPL ESRDGRFNYQ

Best Arabidopsis Sequence Match ( AT1G78600.2 )
(BLAST)

001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKTDVLKMKL LDSACLGKKL EKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS
301: TPYTGSSPNQ RVGKRRRRF

Arabidopsis Description

LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.