Factsheet for GSMUA_Achr11P12670_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P16260_001	Banana	endoplasmic reticulum	50.0	70.71
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	61.11	66.85
GSMUA_Achr3P16700_001	Banana	nucleus	48.48	49.23
GSMUA_Achr11P...	Banana	nucleus	35.86	38.38
GSMUA_Achr11P...	Banana	cytosol	37.88	37.88
GSMUA_Achr9P20930_001	Banana	cytosol	32.32	34.41
GSMUA_Achr4P05180_001	Banana	cytosol	33.84	33.0
GSMUA_Achr9P02360_001	Banana	cytosol	39.39	32.77
GSMUA_Achr6P21590_001	Banana	nucleus	48.99	32.33
GSMUA_Achr6P14750_001	Banana	nucleus	45.96	30.13
GSMUA_Achr6P21320_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	37.88	29.53
GSMUA_AchrUn_...	Banana	nucleus	35.86	25.54
GSMUA_Achr11P...	Banana	nucleus	33.33	25.19
GSMUA_Achr10P...	Banana	cytosol	26.26	25.0
GSMUA_Achr1P07770_001	Banana	cytosol	27.27	22.31
GSMUA_Achr1P07740_001	Banana	nucleus	36.36	18.37
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	34.34	17.75
GSMUA_Achr6P17960_001	Banana	cytosol	17.17	15.89

Protein Annotations

EnsemblPlants:GSMUA_Achr11P12670_001	EnsemblPlants:GSMUA_Achr11T12670_001	EnsemblPlantsGene:GSMUA_Achr11G12670_001	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31832	PFAM:PF00643	PFscan:PS50119	SEG:seg	SMART:SM00336	UniParc:UPI000295B459
UniProt:M0RRP7	MapMan:15.5.1.1	:	:	:	:

Description

Putative Probable salt tolerance-like protein At1g78600 [Source:GMGC_GENE;Acc:GSMUA_Achr11G12670_001]

Coordinates

chr11:+:11689421..11692924

Molecular Weight (calculated)

21354.9 Da

IEP (calculated)

6.283

GRAVY (calculated)

-0.397

Length

198 amino acids

Sequence
(BLAST)

001: MKIQCDVCER AAAAVLCCAD EAALCWSCDE KVHAANKLAG KHQRVPLLPT NPNSCSSQIP NCDICQEKAG YFFCLEDRAL LCRQCDVVIH TASPYVSSHQ
101: RFLITGLQVA LQHHLTNGSN KNSSSGGNGD SNSTRSDGPH RSQVTADSIV NQKLQAATSG YVTEEGLRPP WPWNEILGGF QFDPCHGLSE PGSPDQTG

Best Arabidopsis Sequence Match ( AT1G78600.2 )
(BLAST)

001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKTDVLKMKL LDSACLGKKL EKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS
301: TPYTGSSPNQ RVGKRRRRF

Arabidopsis Description

LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.