Factsheet for GSMUA_Achr1P07770_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	67.77	78.85
Zm00001d021278_P001	Maize	cytosol	56.61	66.5
Os09t0527900-01	Rice	cytosol	57.85	66.35
CDX82018	Canola	cytosol	51.24	66.31
Bra031180.1-P	Field mustard	cytosol	50.83	65.43
EER97079	Sorghum	cytosol	57.02	65.4
AT2G21320.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	45.87	64.53
CDY12111	Canola	cytosol	47.11	63.33
Bra010718.1-P	Field mustard	cytosol	47.11	63.33
CDX90301	Canola	cytosol	46.28	62.22
TraesCS5D01G323400.1	Wheat	cytosol	53.72	61.61
TraesCS5B01G317700.1	Wheat	cytosol	53.31	61.14
TraesCS5A01G317100.1	Wheat	cytosol	53.31	61.14
CDX72726	Canola	cytosol	45.04	60.89
Bra033588.1-P	Field mustard	cytosol	45.45	60.44
CDY22402	Canola	plastid	36.36	54.66
AT4G38960.3	Thale cress	cytosol	47.11	50.44
HORVU5Hr1G081190.1	Barley	cytosol, nucleus, plastid	53.31	46.91
Zm00001d006198_P001	Maize	cytosol	43.8	41.73
GSMUA_Achr8P16260_001	Banana	endoplasmic reticulum	22.73	39.29
GSMUA_Achr6P17960_001	Banana	cytosol	30.17	34.11
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	24.38	32.6
GSMUA_Achr3P16700_001	Banana	nucleus	22.31	27.69
GSMUA_Achr11P...	Banana	nucleus	22.31	27.27
GSMUA_Achr9P20930_001	Banana	cytosol	20.25	26.34
GSMUA_Achr11P...	Banana	nucleus	19.83	25.95
GSMUA_Achr9P02360_001	Banana	cytosol	24.38	24.79
GSMUA_Achr4P05180_001	Banana	cytosol	20.66	24.63
GSMUA_Achr11P...	Banana	cytosol	19.83	24.24
GSMUA_Achr6P21320_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	25.21	24.02
GSMUA_Achr11P...	Banana	nucleus	23.14	21.37
GSMUA_Achr6P14750_001	Banana	nucleus	24.38	19.54
GSMUA_Achr6P21590_001	Banana	nucleus	23.97	19.33
GSMUA_AchrUn_...	Banana	nucleus	21.49	18.7
GSMUA_Achr1P07740_001	Banana	nucleus	23.55	14.54
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	21.07	13.32

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr1G07770_001	EnsemblPlants:GSMUA_Achr1P07770_001	EnsemblPlants:GSMUA_Achr1T07770_001	InterPro:IPR000315
UniProt:M0RXY5	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF5	SMART:SM00336
UniParc:UPI000296EB8B	InterPro:Znf_B-box	:	:	:	:

Description

B-box zinc finger family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G07770_001]

Coordinates

chr1:-:5987632..5992019

Molecular Weight (calculated)

27238.5 Da

IEP (calculated)

6.379

GRAVY (calculated)

-0.388

Length

242 amino acids

Sequence
(BLAST)

001: MRTICDVCES APAILFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLADP SEVPHCDICE NAPAFFYCEI DGSSLCLQCD MAVHVGGKRT HRRYLLLRQR
101: VEFPGSRSSH MEELKTKAKD FDEHRRDHKM VMTEKMTNRK LSADPALDAT NNHDGKMDSN MIDLNTRPVR IHEQASNTQA QQMDLASDNN HDSPGVVPTG
201: PFQNSGSSIC INVTYHHFTC TTQIILQVLG LEFFEIFCMH IE

Best Arabidopsis Sequence Match ( AT4G38960.1 )
(BLAST)

001: MRILCDACEN AAAIIFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK

Arabidopsis Description

B-box type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.