Factsheet for Bra010718.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90301	Canola	cytosol	98.89	98.89
CDY12111	Canola	cytosol	98.33	98.33
Bra033588.1-P	Field mustard	cytosol	91.67	90.66
Solyc02g084420.2.1	Tomato	cytosol	41.11	84.09
Bra031180.1-P	Field mustard	cytosol	80.0	76.6
AT4G38960.3	Thale cress	cytosol	94.44	75.22
VIT_03s0038g00690.t01	Wine grape	cytosol	70.56	60.48
VIT_04s0023g03030.t01	Wine grape	cytosol	60.56	59.24
PGSC0003DMT400008044	Potato	cytosol	68.89	58.49
KRH28766	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	61.67	57.51
PGSC0003DMT400009328	Potato	cytosol	57.78	57.14
KRH29344	Soybean	nucleus	65.56	55.66
KRH24373	Soybean	nucleus	65.56	55.66
GSMUA_Achr10P...	Banana	cytosol	62.78	54.33
Zm00001d021278_P001	Maize	cytosol	61.11	53.4
Os09t0527900-01	Rice	cytosol	62.22	53.08
KRH76689	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	61.67	52.86
EER97079	Sorghum	cytosol	61.11	52.13
Solyc01g110370.2.1	Tomato	cytosol	68.33	51.04
TraesCS5B01G317700.1	Wheat	cytosol	59.44	50.71
TraesCS5D01G323400.1	Wheat	cytosol	58.89	50.24
TraesCS5A01G317100.1	Wheat	cytosol	58.89	50.24
GSMUA_Achr1P07770_001	Banana	cytosol	63.33	47.11
HORVU5Hr1G081190.1	Barley	cytosol, nucleus, plastid	58.89	38.55
Zm00001d006198_P001	Maize	cytosol	51.11	36.22
Bra015469.1-P	Field mustard	nucleus	31.11	23.05
Bra018249.1-P	Field mustard	nucleus	30.56	22.63
Bra021734.1-P	Field mustard	nucleus	30.0	22.5
Bra030635.1-P	Field mustard	nucleus	29.44	21.99
Bra032441.1-P	Field mustard	nucleus	28.33	21.79
Bra010713.1-P	Field mustard	nucleus	28.89	21.58
Bra011879.1-P	Field mustard	nucleus	28.33	21.34
Bra003640.1-P	Field mustard	nucleus	32.78	20.49
Bra035051.1-P	Field mustard	nucleus	32.78	20.21
Bra008371.1-P	Field mustard	nucleus	31.67	19.59
Bra008204.1-P	Field mustard	nucleus	30.0	17.88
Bra015835.1-P	Field mustard	nucleus	31.11	17.45
Bra003748.1-P	Field mustard	nucleus	30.56	17.24

Protein Annotations

EnsemblPlants:Bra010718.1	EnsemblPlants:Bra010718.1-P	EnsemblPlantsGene:Bra010718	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31832	PANTHER:PTHR31832:SF5	PFAM:PF00643	PFscan:PS50119	SMART:SM00336	UniParc:UPI0002546B45
UniProt:M4D2L5	MapMan:15.5.1.1	:	:	:	:

Description

AT4G38960 (E=3e-100) | zinc finger (B-box type) family protein

Coordinates

chrA08:-:16105568..16106906

Molecular Weight (calculated)

19762.2 Da

IEP (calculated)

5.929

GRAVY (calculated)

-0.588

Length

180 amino acids

Sequence
(BLAST)

001: MRILCDACEN AAAIVFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDKPKQ NNTRDNMQNQ RVSASANGEA NGKTDDEMID LNANPQRVHE PSSNNQGIDV NNTNNHESAG VGPFKRESEK

Best Arabidopsis Sequence Match ( AT4G38960.1 )
(BLAST)

001: MRILCDACEN AAAIIFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK

Arabidopsis Description

B-box type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.