Factsheet for VIT_04s0023g03030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g00690.t01	Wine grape	cytosol	77.72	68.1
AT2G21320.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	57.61	61.63
CDX82018	Canola	cytosol	61.96	60.96
Bra010718.1-P	Field mustard	cytosol	59.24	60.56
CDX90301	Canola	cytosol	59.24	60.56
PGSC0003DMT400008044	Potato	cytosol	69.57	60.38
Zm00001d021278_P001	Maize	cytosol	67.39	60.19
Os09t0527900-01	Rice	cytosol	69.02	60.19
Bra031180.1-P	Field mustard	cytosol	61.41	60.11
CDY12111	Canola	cytosol	58.7	60.0
CDX72726	Canola	cytosol	58.15	59.78
Bra033588.1-P	Field mustard	cytosol	58.7	59.34
EER97079	Sorghum	cytosol	67.39	58.77
TraesCS5A01G317100.1	Wheat	cytosol	66.3	57.82
TraesCS5B01G317700.1	Wheat	cytosol	66.3	57.82
TraesCS5D01G323400.1	Wheat	cytosol	65.76	57.35
Solyc01g110370.2.1	Tomato	cytosol	69.02	52.7
CDY22402	Canola	plastid	45.65	52.17
AT4G38960.3	Thale cress	cytosol	58.7	47.79
HORVU5Hr1G081190.1	Barley	cytosol, nucleus, plastid	66.3	44.36
Zm00001d006198_P001	Maize	cytosol	58.15	42.13
GSMUA_Achr6P17960_001	Banana	cytosol	40.76	35.05
VIT_05s0102g00750.t01	Wine grape	nucleus	29.35	22.59
VIT_18s0089g01280.t01	Wine grape	nucleus	25.0	22.44
VIT_19s0014g00350.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	32.07	20.14
VIT_18s0001g13520.t01	Wine grape	nucleus	29.35	17.82
VIT_03s0038g00340.t01	Wine grape	nucleus	27.17	16.56

Protein Annotations

EntrezGene:100852825	wikigene:100852825	MapMan:15.5.1.1	Gene3D:3.30.40.200	ProteinID:CBI17405	ProteinID:CBI17405.3
UniProt:D7SP26	EMBL:FN594959	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640
GO:GO:0009791	GO:GO:0009987	InterPro:IPR000315	EntrezGene:LOC100852825	wikigene:LOC100852825	PFAM:PF00643
PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF17	SMART:SM00336	TIGR:TC52212	UniParc:UPI0001983320
ArrayExpress:VIT_04s0023g03030	EnsemblPlantsGene:VIT_04s0023g03030	EnsemblPlants:VIT_04s0023g03030.t01	unigene:Vvi.1091	RefSeq:XP_003631872	RefSeq:XP_003631872.1
InterPro:Znf_B-box	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:19619202..19622194

Molecular Weight (calculated)

20367.4 Da

IEP (calculated)

6.904

GRAVY (calculated)

-0.472

Length

184 amino acids

Sequence
(BLAST)

001: MRTLCDVCES AAAILFCAAD EAALCRVCDE KVHMCNKLAS RHVRVGLADP SDVPRCDICE NAPAFFYCEI DGTSLCLQCD MIVHVGGKRT HGRYLLLRQR
101: VEFPGDKSGN LEDPALLPME PGENRRGQNQ SSKPTVVENQ QNRRVSPVPT MDANADGHAK MDTKLIDLNM KPHRIHGQAS NNQH

Best Arabidopsis Sequence Match ( AT4G38960.1 )
(BLAST)

001: MRILCDACEN AAAIIFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK

Arabidopsis Description

B-box type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.