Factsheet for PGSC0003DMT400008044

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g110370.2.1	Tomato	cytosol	95.75	84.23
VIT_03s0038g00690.t01	Wine grape	cytosol	70.28	70.95
VIT_04s0023g03030.t01	Wine grape	cytosol	60.38	69.57
Bra010718.1-P	Field mustard	cytosol	58.49	68.89
CDX82018	Canola	cytosol	60.38	68.45
CDX72726	Canola	cytosol	57.55	68.16
Bra033588.1-P	Field mustard	cytosol	58.49	68.13
CDX90301	Canola	cytosol	57.55	67.78
CDY12111	Canola	cytosol	57.55	67.78
Bra031180.1-P	Field mustard	cytosol	59.91	67.55
KRH29344	Soybean	nucleus	66.04	66.04
AT2G21320.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	53.3	65.7
KRH24373	Soybean	nucleus	65.09	65.09
PGSC0003DMT400009328	Potato	cytosol	55.19	64.29
CDY22402	Canola	plastid	47.17	62.11
Zm00001d021278_P001	Maize	cytosol	58.49	60.19
Os09t0527900-01	Rice	cytosol	59.91	60.19
EER97079	Sorghum	cytosol	58.96	59.24
TraesCS5A01G317100.1	Wheat	cytosol	56.13	56.4
TraesCS5B01G317700.1	Wheat	cytosol	56.13	56.4
TraesCS5D01G323400.1	Wheat	cytosol	55.66	55.92
AT4G38960.3	Thale cress	cytosol	58.49	54.87
HORVU5Hr1G081190.1	Barley	cytosol, nucleus, plastid	55.66	42.91
Zm00001d006198_P001	Maize	cytosol	47.17	39.37
GSMUA_Achr6P17960_001	Banana	cytosol	34.91	34.58
PGSC0003DMT400069498	Potato	nucleus	24.06	21.89
PGSC0003DMT400018196	Potato	nucleus	30.66	21.81
PGSC0003DMT400009514	Potato	nucleus	27.83	19.8
PGSC0003DMT400048964	Potato	nucleus	27.83	19.73
PGSC0003DMT400079507	Potato	nucleus	21.7	18.25
PGSC0003DMT400075652	Potato	nucleus	24.53	15.76

Protein Annotations

EMBL:KX576531	EnsemblPlants:PGSC0003DMT400008044	EnsemblPlantsGene:PGSC0003DMG400003109	EntrezGene:102578169	Gene3D:3.30.40.200	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315
InterPro:Znf_B-box	PANTHER:PTHR31832	PANTHER:PTHR31832:SF5	PFAM:PF00643	PFscan:PS50119	PGSC:PGSC0003DMG400003109
RefSeq:XP_006361997.1	SMART:SM00336	UniParc:UPI000294F469	UniProt:M0ZTY8	MapMan:15.5.1.1	:

Description

Salt-tolerance protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003109]

Coordinates

chr1:-:86666771..86673688

Molecular Weight (calculated)

23538.1 Da

IEP (calculated)

6.084

GRAVY (calculated)

-0.502

Length

212 amino acids

Sequence
(BLAST)

001: MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SKIQRCDICE NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLIRQR
101: IEFPGDKLGP SNELGFPSTE QGDVRREPAL PFKLPMIDNH QPNRETAMAA VENNVNNSVK MENELIDLNS RPHRMHGQTS NNQEQGMDML GGSNHESVGV
201: VPDGPFKREP EK

Best Arabidopsis Sequence Match ( AT4G38960.1 )
(BLAST)

001: MRILCDACEN AAAIIFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK

Arabidopsis Description

B-box type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.