CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29344	Soybean	nucleus	95.28	95.28
VIT_03s0038g00690.t01	Wine grape	cytosol	70.75	71.43
KRH28766	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	59.91	65.8
Bra010718.1-P	Field mustard	cytosol	55.66	65.56
PGSC0003DMT400008044	Potato	cytosol	65.09	65.09
CDX90301	Canola	cytosol	55.19	65.0
CDX82018	Canola	cytosol	57.08	64.71
AT2G21320.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	52.36	64.53
CDY12111	Canola	cytosol	54.72	64.44
Bra031180.1-P	Field mustard	cytosol	57.08	64.36
CDX72726	Canola	cytosol	54.25	64.25
Bra033588.1-P	Field mustard	cytosol	53.77	62.64
KRH76689	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	60.38	60.95
Os09t0527900-01	Rice	cytosol	59.91	60.19
Zm00001d021278_P001	Maize	cytosol	57.08	58.74
EER97079	Sorghum	cytosol	57.55	57.82
TraesCS5D01G323400.1	Wheat	cytosol	57.08	57.35
TraesCS5B01G317700.1	Wheat	cytosol	56.6	56.87
TraesCS5A01G317100.1	Wheat	cytosol	56.6	56.87
Solyc01g110370.2.1	Tomato	cytosol	64.15	56.43
CDY22402	Canola	plastid	42.45	55.9
AT4G38960.3	Thale cress	cytosol	54.72	51.33
HORVU5Hr1G081190.1	Barley	cytosol, nucleus, plastid	55.66	42.91
Zm00001d006198_P001	Maize	cytosol	47.64	39.76
GSMUA_Achr6P17960_001	Banana	cytosol	36.32	35.98
KRH23214	Soybean	nucleus	27.36	24.27
KRH29616	Soybean	nucleus	26.42	23.53
KRH24617	Soybean	nucleus	26.42	23.53
KRH37922	Soybean	nucleus	31.6	22.95
KRH51476	Soybean	nucleus	24.06	21.89
KRH21881	Soybean	nucleus	30.19	21.84
KRH51757	Soybean	nucleus	25.0	21.63
KRH24393	Soybean	nucleus	20.75	21.46
KRH61078	Soybean	nucleus	25.47	20.3
KRH29378	Soybean	nucleus	26.89	19.79
KRH17384	Soybean	nucleus	25.47	19.57
KRH27404	Soybean	extracellular, vacuole	29.72	16.84
KRH60788	Soybean	nucleus	25.0	16.61
KRH05902	Soybean	nucleus	25.0	16.21
KRH10122	Soybean	nucleus	26.89	14.54

Protein Annotations

EntrezGene:100818604	MapMan:15.5.1.1	Gene3D:3.30.40.200	EMBL:ACUP02007175	EnsemblPlantsGene:GLYMA_12G037200	GO:GO:0000989
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009791	GO:GO:0009987	InterPro:IPR000315
UniProt:K7LSW1	EnsemblPlants:KRH24373	ProteinID:KRH24373	ProteinID:KRH24373.1	PFAM:PF00643	PFscan:PS50119
PANTHER:PTHR31832	PANTHER:PTHR31832:SF17	SMART:SM00336	UniParc:UPI000233CD60	InterPro:Znf_B-box	:

Description

hypothetical protein

Coordinates

chr12:+:2698742..2702408

Molecular Weight (calculated)

23684.3 Da

IEP (calculated)

7.133

GRAVY (calculated)

-0.592

Length

212 amino acids

Sequence
(BLAST)

001: MRTLCDVCES AAAIVFCAAD EAALCSACDH KIHMCNKLAS RHVRVGLADP TDVPRCDICE NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR
101: VQFPCDKPAQ MEELGLQPMD QNESRRDESQ SLKLKIRDSQ QNHSVSPVPR QENNIDGHGK MDKKLIDLNT RPLRLNGAAP NNQERGMDIL RGNNHKSASV
201: PPVESFKQES EK

Best Arabidopsis Sequence Match ( AT4G38960.1 )
(BLAST)

001: MRILCDACEN AAAIIFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK

Arabidopsis Description

B-box type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.