CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
plastid 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21881	Soybean	nucleus	72.46	92.49
KRH37922	Soybean	nucleus	58.29	74.66
HORVU7Hr1G023060.1	Barley	cytosol, mitochondrion, nucleus	14.17	73.61
Solyc07g062160.2.1	Tomato	nucleus	48.93	61.41
PGSC0003DMT400018196	Potato	nucleus	48.93	61.41
PGSC0003DMT400048964	Potato	nucleus	44.65	55.85
Solyc12g005420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	41.71	55.32
Bra035051.1-P	Field mustard	nucleus	42.25	54.11
CDX87448	Canola	nucleus	42.25	54.11
Bra008371.1-P	Field mustard	nucleus	41.98	53.95
CDX88458	Canola	nucleus	42.51	53.9
CDY11657	Canola	nucleus	42.51	53.9
CDX79268	Canola	nucleus	41.44	53.82
CDY14607	Canola	nucleus	41.71	53.61
Bra003640.1-P	Field mustard	nucleus	41.18	53.47
CDY69214	Canola	nucleus	41.18	53.47
CDY26870	Canola	nucleus	41.71	52.0
AT1G78600.2	Thale cress	nucleus	40.91	47.96
GSMUA_Achr6P21590_001	Banana	nucleus	37.7	47.0
GSMUA_Achr6P14750_001	Banana	nucleus	36.9	45.7
TraesCS7B01G006400.1	Wheat	nucleus	36.63	40.53
Os06t0152200-01	Rice	nucleus	38.24	39.72
KRH24617	Soybean	nucleus	25.13	39.5
KXG19323	Sorghum	nucleus	39.3	39.2
TraesCS7A01G108400.1	Wheat	nucleus	37.17	38.72
KRH29616	Soybean	nucleus	24.6	38.66
TraesCS7D01G103300.1	Wheat	nucleus	37.43	38.57
Zm00001d036214_P001	Maize	nucleus	38.5	37.31
KRH23214	Soybean	nucleus	23.26	36.4
HORVU7Hr1G023100.2	Barley	plastid	38.24	35.57
Zm00001d045323_P004	Maize	nucleus	39.3	34.83
KRH17384	Soybean	nucleus	22.99	31.16
KRH28766	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	16.04	31.09
KRH51757	Soybean	nucleus	20.32	31.02
KRH61078	Soybean	nucleus	21.39	30.08
KRH51476	Soybean	nucleus	18.72	30.04
KRH24373	Soybean	nucleus	16.84	29.72
KRH76689	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	16.58	29.52
KRH29344	Soybean	nucleus	16.31	28.77
KRH29378	Soybean	nucleus	21.66	28.12
KRH05902	Soybean	nucleus	23.26	26.61
KRH24393	Soybean	nucleus	13.37	24.39
KRH10122	Soybean	nucleus	25.4	24.23
KRH60788	Soybean	nucleus	20.05	23.51

Protein Annotations

EntrezGene:100819131	MapMan:15.5.1.1	Gene3D:3.30.40.200	EMBL:ACUP02007803	EnsemblPlantsGene:GLYMA_12G233900	GO:GO:0000989
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009791	GO:GO:0009987	GO:GO:0046872
InterPro:IPR000315	UniProt:K7LWJ8	EnsemblPlants:KRH27404	ProteinID:KRH27404	ProteinID:KRH27404.1	PFAM:PF00643
PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF31	SMART:SM00336	SignalP:SignalP-noTM	UniParc:UPI000233CD35
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:39321100..39325411

Molecular Weight (calculated)

41035.3 Da

IEP (calculated)

4.726

GRAVY (calculated)

-0.207

Length

374 amino acids

Sequence
(BLAST)

001: MNLVAAKNIL HFFLLSLLRH FLNPAPLLRG APNLFFSFFS LSQFQTVDLD TLLEKEVFFE GKEGIFCVGG WNPEFGLVGV ERMKIQCNVC EAAEAKVLCC
101: ADEAGLCWEC DEKVHAANKL ASKHQRVPLS TSSSHMPKCD ICQEALGYFF CLEDRALLCR KCDVAIHTAN AYVSGHQRFL LTGVRVGLEA TDPGASSTSL
201: KSDSGEKVSD SSVSRKVSTA PQPSNYNEVL PAEVGGVGEF PSAKVSFGGG STAGNISQWT IDEFIGLNEF SQNYDYMEGS SRADGGKLGD SDSPVLRSGE
301: EEMEEEDDYL ERVPDSSWTV PQIPSPPTSS GLCWPKDHTN LYGSSDSVLF VPDISFSHLQ QSQISIFLRR RRQL

Best Arabidopsis Sequence Match ( AT1G78600.1 )
(BLAST)

001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF

Arabidopsis Description

LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.