Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75540.1 | KRH14801 | AT2G32950.1 | 17965270 |
| AT1G75540.1 | KRH73341 | AT2G32950.1 | 17965270 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH61078 | Soybean | nucleus | 87.35 | 80.45 |
| KRH17384 | Soybean | nucleus | 57.55 | 51.09 |
| Zm00001d017412_P001 | Maize | nucleus | 28.98 | 50.0 |
| GSMUA_Achr9P20930_001 | Banana | cytosol | 35.51 | 46.77 |
| GSMUA_Achr11P... | Banana | nucleus | 35.1 | 46.49 |
| GSMUA_Achr4P05180_001 | Banana | cytosol | 37.55 | 45.32 |
| GSMUA_Achr11P... | Banana | cytosol | 36.33 | 44.95 |
| PGSC0003DMT400009514 | Potato | nucleus | 54.29 | 44.63 |
| VIT_18s0001g13520.t01 | Wine grape | nucleus | 54.69 | 44.22 |
| Solyc04g081020.2.1 | Tomato | nucleus | 53.88 | 44.15 |
| KRH05902 | Soybean | nucleus | 58.37 | 43.73 |
| KRH51476 | Soybean | nucleus | 40.0 | 42.06 |
| TraesCS6A01G239300.1 | Wheat | nucleus | 40.0 | 41.53 |
| TraesCS6B01G285200.1 | Wheat | nucleus | 39.59 | 40.76 |
| TraesCS6D01G221700.1 | Wheat | nucleus | 39.59 | 40.76 |
| Solyc12g089240.1.1 | Tomato | nucleus | 54.29 | 40.43 |
| Zm00001d002806_P001 | Maize | nucleus | 42.45 | 40.31 |
| Zm00001d025957_P001 | Maize | nucleus | 42.04 | 40.23 |
| PGSC0003DMT400075652 | Potato | nucleus | 53.88 | 40.0 |
| Bra015835.1-P | Field mustard | nucleus | 52.24 | 39.88 |
| CDY47514 | Canola | nucleus | 52.24 | 39.88 |
| Os04t0540200-01 | Rice | nucleus | 40.41 | 39.6 |
| CDY13564 | Canola | nucleus | 48.57 | 39.27 |
| CDX73178 | Canola | nucleus | 51.43 | 39.13 |
| Bra008204.1-P | Field mustard | nucleus | 48.16 | 39.07 |
| OQU82040 | Sorghum | nucleus | 42.04 | 38.87 |
| CDX68124 | Canola | nucleus | 49.39 | 37.93 |
| Os02t0646200-01 | Rice | nucleus | 41.63 | 37.92 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.86 | 37.77 |
| CDX85903 | Canola | nucleus | 48.98 | 37.62 |
| Bra003748.1-P | Field mustard | nucleus | 48.98 | 37.62 |
| TraesCS2A01G388500.1 | Wheat | nucleus | 39.59 | 37.6 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 40.0 | 37.4 |
| GSMUA_Achr11P... | Banana | nucleus | 40.0 | 37.4 |
| CDY39040 | Canola | nucleus | 44.49 | 37.07 |
| TraesCS2B01G406600.2 | Wheat | nucleus | 40.0 | 36.98 |
| KRH29378 | Soybean | nucleus | 42.45 | 36.11 |
| AT1G75540.1 | Thale cress | nucleus | 48.57 | 35.95 |
| Zm00001d051309_P001 | Maize | nucleus | 40.0 | 35.38 |
| HORVU7Hr1G091180.1 | Barley | nucleus | 38.78 | 34.55 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 40.0 | 34.39 |
| KRH24393 | Soybean | nucleus | 28.57 | 34.15 |
| EES07539 | Sorghum | nucleus | 40.41 | 33.56 |
| KRH60788 | Soybean | nucleus | 42.86 | 32.92 |
| HORVU2Hr1G092460.9 | Barley | cytosol, mitochondrion, nucleus | 37.96 | 32.63 |
| KRH29616 | Soybean | nucleus | 31.02 | 31.93 |
| KRH23214 | Soybean | nucleus | 31.02 | 31.8 |
| Zm00001d036418_P001 | Maize | nucleus | 34.29 | 31.23 |
| KRH24617 | Soybean | nucleus | 30.2 | 31.09 |
| TraesCS7A01G383400.3 | Wheat | nucleus | 39.59 | 30.99 |
| TraesCS7B01G286300.1 | Wheat | nucleus | 39.18 | 30.87 |
| Os06t0713000-01 | Rice | nucleus | 38.78 | 30.84 |
| EER90373 | Sorghum | cytosol | 36.73 | 29.51 |
| KRH37922 | Soybean | nucleus | 33.47 | 28.08 |
| KRH28766 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.63 | 27.46 |
| Zm00001d014765_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 38.78 | 26.76 |
| KRH21881 | Soybean | nucleus | 31.02 | 25.94 |
| GSMUA_Achr1P07740_001 | Banana | nucleus | 41.22 | 25.77 |
| GSMUA_Achr4P04990_001 | Banana | extracellular, golgi | 40.0 | 25.59 |
| KRH76689 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.63 | 25.24 |
| KRH24373 | Soybean | nucleus | 21.63 | 25.0 |
| KRH29344 | Soybean | nucleus | 21.63 | 25.0 |
| KRH27404 | Soybean | extracellular, vacuole | 31.02 | 20.32 |
| KRH10122 | Soybean | nucleus | 31.02 | 19.39 |
Protein Annotations
| EntrezGene:100794842 | MapMan:15.5.1.1 | Gene3D:3.30.40.200 | UniProt:A0A0R4J3G1 | EMBL:ACUP02003388 | EnsemblPlantsGene:GLYMA_06G027000 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 |
| GO:GO:0046872 | InterPro:IPR000315 | EnsemblPlants:KRH51757 | ProteinID:KRH51757 | ProteinID:KRH51757.1 | PFAM:PF00643 |
| PFscan:PS50119 | PANTHER:PTHR31832 | PANTHER:PTHR31832:SF6 | SMART:SM00336 | UniParc:UPI000189D240 | InterPro:Znf_B-box |
Description
hypothetical protein
Coordinates
chr6:-:2087092..2088456
Molecular Weight (calculated)
27173.0 Da
IEP (calculated)
6.581
GRAVY (calculated)
-0.440
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDVCNK QQASLFCTAD EAALCDGCDH RVHHANKLAS KHQRFSLSHP SAKHFPLCDV CQERRAFVFC QQDRAILCKE CDVPVHSAND LTKNHNRFLL
101: TGIKFSALDS PSTPPKPAGG NSLTNQQPQQ QTGFTGSSIS EYLINTIPGM EFEDFLDSHS LPFACSKNSD DMMLSMFGEG NMVSFSAGGI WVPQAPSSVQ
201: MDQQSGYKDT WETSIRSSFG DDSLLVPQMT PPSNVFNNKR SRLLW
101: TGIKFSALDS PSTPPKPAGG NSLTNQQPQQ QTGFTGSSIS EYLINTIPGM EFEDFLDSHS LPFACSKNSD DMMLSMFGEG NMVSFSAGGI WVPQAPSSVQ
201: MDQQSGYKDT WETSIRSSFG DDSLLVPQMT PPSNVFNNKR SRLLW
001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
Arabidopsis Description
BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.