Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75540.1 | KRH14801 | AT2G32950.1 | 17965270 |
| AT1G75540.1 | KRH73341 | AT2G32950.1 | 17965270 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH51757 | Soybean | nucleus | 80.45 | 87.35 |
| KRH17384 | Soybean | nucleus | 54.51 | 52.54 |
| Zm00001d017412_P001 | Maize | nucleus | 26.69 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 33.46 | 48.11 |
| GSMUA_Achr9P20930_001 | Banana | cytosol | 31.95 | 45.7 |
| VIT_18s0001g13520.t01 | Wine grape | nucleus | 51.88 | 45.54 |
| GSMUA_Achr4P05180_001 | Banana | cytosol | 34.59 | 45.32 |
| PGSC0003DMT400009514 | Potato | nucleus | 50.75 | 45.3 |
| KRH05902 | Soybean | nucleus | 55.64 | 45.26 |
| Solyc04g081020.2.1 | Tomato | nucleus | 50.75 | 45.15 |
| GSMUA_Achr11P... | Banana | cytosol | 33.08 | 44.44 |
| KRH51476 | Soybean | nucleus | 36.47 | 41.63 |
| Solyc12g089240.1.1 | Tomato | nucleus | 51.13 | 41.34 |
| PGSC0003DMT400075652 | Potato | nucleus | 50.75 | 40.91 |
| CDY13564 | Canola | nucleus | 46.24 | 40.59 |
| CDY47514 | Canola | nucleus | 48.87 | 40.5 |
| Bra015835.1-P | Field mustard | nucleus | 48.87 | 40.5 |
| TraesCS6A01G239300.1 | Wheat | nucleus | 35.34 | 39.83 |
| CDX73178 | Canola | nucleus | 48.12 | 39.75 |
| TraesCS6D01G221700.1 | Wheat | nucleus | 35.34 | 39.5 |
| TraesCS6B01G285200.1 | Wheat | nucleus | 35.34 | 39.5 |
| Bra008204.1-P | Field mustard | nucleus | 44.74 | 39.4 |
| GSMUA_Achr11P... | Banana | nucleus | 38.72 | 39.31 |
| Os04t0540200-01 | Rice | nucleus | 36.47 | 38.8 |
| Zm00001d002806_P001 | Maize | nucleus | 37.59 | 38.76 |
| Zm00001d025957_P001 | Maize | nucleus | 37.22 | 38.67 |
| CDX68124 | Canola | nucleus | 46.24 | 38.56 |
| CDX85903 | Canola | nucleus | 45.86 | 38.24 |
| Bra003748.1-P | Field mustard | nucleus | 45.86 | 38.24 |
| Os02t0646200-01 | Rice | nucleus | 38.35 | 37.92 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.47 | 37.77 |
| OQU82040 | Sorghum | nucleus | 37.59 | 37.74 |
| CDY39040 | Canola | nucleus | 41.35 | 37.41 |
| KRH29378 | Soybean | nucleus | 39.85 | 36.81 |
| AT1G75540.1 | Thale cress | nucleus | 45.49 | 36.56 |
| TraesCS2A01G388500.1 | Wheat | nucleus | 34.96 | 36.05 |
| HORVU7Hr1G091180.1 | Barley | nucleus | 37.22 | 36.0 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 35.34 | 35.88 |
| TraesCS2B01G406600.2 | Wheat | nucleus | 34.96 | 35.09 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 37.22 | 34.74 |
| KRH24393 | Soybean | nucleus | 26.32 | 34.15 |
| Zm00001d051309_P001 | Maize | nucleus | 35.34 | 33.94 |
| EES07539 | Sorghum | nucleus | 37.22 | 33.56 |
| KRH29616 | Soybean | nucleus | 29.7 | 33.19 |
| KRH24617 | Soybean | nucleus | 29.32 | 32.77 |
| KRH23214 | Soybean | nucleus | 29.32 | 32.64 |
| KRH60788 | Soybean | nucleus | 39.1 | 32.6 |
| Zm00001d036418_P001 | Maize | nucleus | 32.71 | 32.34 |
| Os06t0713000-01 | Rice | nucleus | 37.22 | 32.14 |
| HORVU2Hr1G092460.9 | Barley | cytosol, mitochondrion, nucleus | 34.21 | 31.93 |
| TraesCS7B01G286300.1 | Wheat | nucleus | 36.84 | 31.51 |
| TraesCS7A01G383400.3 | Wheat | nucleus | 36.84 | 31.31 |
| EER90373 | Sorghum | cytosol | 34.96 | 30.49 |
| KRH37922 | Soybean | nucleus | 31.95 | 29.11 |
| Zm00001d014765_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 36.84 | 27.61 |
| KRH21881 | Soybean | nucleus | 29.7 | 26.96 |
| KRH28766 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.55 | 26.94 |
| GSMUA_Achr4P04990_001 | Banana | extracellular, golgi | 37.22 | 25.85 |
| GSMUA_Achr1P07740_001 | Banana | nucleus | 37.59 | 25.51 |
| KRH24373 | Soybean | nucleus | 20.3 | 25.47 |
| KRH76689 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.92 | 25.24 |
| KRH29344 | Soybean | nucleus | 19.92 | 25.0 |
| KRH27404 | Soybean | extracellular, vacuole | 30.08 | 21.39 |
| KRH10122 | Soybean | nucleus | 29.32 | 19.9 |
Protein Annotations
| EntrezGene:100785978 | MapMan:15.5.1.1 | Gene3D:3.30.40.200 | EMBL:ACUP02002153 | EnsemblPlantsGene:GLYMA_04G027000 | GO:GO:0000989 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009640 | GO:GO:0009791 | GO:GO:0009987 | UniProt:I1JT58 |
| InterPro:IPR000315 | EnsemblPlants:KRH61078 | ProteinID:KRH61078 | ProteinID:KRH61078.1 | PFAM:PF00643 | PFscan:PS50119 |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF6 | SMART:SM00336 | UniParc:UPI000233A98A | InterPro:Znf_B-box | SEG:seg |
Description
hypothetical protein
Coordinates
chr4:-:2193861..2195469
Molecular Weight (calculated)
29384.5 Da
IEP (calculated)
7.056
GRAVY (calculated)
-0.569
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIHCDVCNK HQASFFCTAD EAALCDGCDH RVHHANKLAS KHQRFSLTHP SAKHFPLCDV CQERRAFVFC QQDRAILCKE CDVPIHSAND LTKNHSRFLL
101: TGIKFSASAT PYDYSSPPPP PPPPPPKRNP VLDSPSTPSP PKPGGNSLTN EEEPGFTGSS ISEYLINSIP GMKFEDFLDS HSLPFACSKN SDDMLSLFGE
201: GNMVSFSPGG FWVPQAPPSS VQMDRQSGYR ETREGSIRSS FGDDNFIVPQ MSPPSNVSNK RSRLLW
101: TGIKFSASAT PYDYSSPPPP PPPPPPKRNP VLDSPSTPSP PKPGGNSLTN EEEPGFTGSS ISEYLINSIP GMKFEDFLDS HSLPFACSKN SDDMLSLFGE
201: GNMVSFSPGG FWVPQAPPSS VQMDRQSGYR ETREGSIRSS FGDDNFIVPQ MSPPSNVSNK RSRLLW
001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
Arabidopsis Description
BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.