Factsheet for Os02t0646200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0771100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75540.1	Os02t0771100-01	AT2G32950.1	17965270

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G285200.1	Wheat	nucleus	70.63	79.83
TraesCS6D01G221700.1	Wheat	nucleus	69.89	78.99
TraesCS6A01G239300.1	Wheat	nucleus	68.4	77.97
Zm00001d017412_P001	Maize	nucleus	37.92	71.83
Zm00001d051309_P001	Maize	nucleus	67.66	65.7
EES07539	Sorghum	nucleus	70.63	64.41
Os04t0540200-01	Rice	nucleus	59.48	64.0
Solyc01g110180.2.1	Tomato	nucleus	34.57	45.81
CDY41957	Canola	nucleus	33.46	42.45
KRH51757	Soybean	nucleus	37.92	41.63
KRH51476	Soybean	nucleus	34.2	39.48
Bra011879.1-P	Field mustard	nucleus	34.94	39.33
CDY42602	Canola	nucleus	34.2	39.32
KRH17384	Soybean	nucleus	40.15	39.13
KRH61078	Soybean	nucleus	37.92	38.35
CDY12117	Canola	nucleus	34.2	38.02
CDX90306	Canola	nucleus	33.83	37.76
Bra010713.1-P	Field mustard	nucleus	33.83	37.76
VIT_18s0001g13520.t01	Wine grape	nucleus	42.38	37.62
AT4G39070.1	Thale cress	cytosol	33.83	37.6
PGSC0003DMT400079507	Potato	nucleus	34.94	37.3
Os06t0713000-01	Rice	nucleus	42.38	37.01
PGSC0003DMT400009514	Potato	nucleus	39.78	35.91
Solyc04g081020.2.1	Tomato	nucleus	39.78	35.79
Bra008204.1-P	Field mustard	nucleus	38.66	34.44
VIT_03s0038g00340.t01	Wine grape	nucleus	38.66	34.44
KRH29378	Soybean	nucleus	36.8	34.38
CDY13564	Canola	nucleus	38.66	34.32
CDY47514	Canola	nucleus	40.89	34.27
Bra015835.1-P	Field mustard	nucleus	40.89	34.27
PGSC0003DMT400075652	Potato	nucleus	41.64	33.94
CDX73178	Canola	nucleus	40.52	33.85
Solyc12g089240.1.1	Tomato	nucleus	41.26	33.74
CDY39040	Canola	nucleus	36.43	33.33
KRH05902	Soybean	nucleus	40.15	33.03
Os12t0209200-01	Rice	cytosol	25.65	32.86
CDX85903	Canola	nucleus	38.66	32.6
CDX68124	Canola	nucleus	38.66	32.6
Bra003748.1-P	Field mustard	nucleus	38.29	32.29
AT1G75540.1	Thale cress	nucleus	39.41	32.02
KRH24393	Soybean	nucleus	23.42	30.73
Os02t0606200-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	29.0	28.78
KRH60788	Soybean	nucleus	33.83	28.53
Os09t0527900-01	Rice	cytosol	20.07	25.59
Os06t0152200-01	Rice	nucleus	31.6	23.61
Os01t0202500-01	Rice	cytosol, nucleus	30.86	23.45
Os05t0204600-01	Rice	cytosol, nucleus, plastid	30.48	21.69
Os04t0493000-01	Rice	cytosol	12.64	18.48

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	EntrezGene:4330144	EMBL:AK071507	ProteinID:BAD25518.1	ProteinID:BAD25819.1
ProteinID:BAF09487.1	ProteinID:BAS80027.1	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640
GO:GO:0009791	GO:GO:0009987	EMBL:HQ858819	InterPro:IPR000315	EnsemblPlantsGene:Os02g0646200	EnsemblPlants:Os02t0646200-01
PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF28	UniProt:Q6H630	SMART:SM00336
UniParc:UPI00003B44B0	RefSeq:XP_015623928.1	InterPro:Znf_B-box	SEG:seg	:	:

Description

B-box-containing protein 6Zinc finger, B-box domain containing protein. (Os02t0646200-01)

Coordinates

chr2:+:26027785..26029488

Molecular Weight (calculated)

28236.7 Da

IEP (calculated)

5.314

GRAVY (calculated)

-0.233

Length

269 amino acids

Sequence
(BLAST)

001: MKVQCDVCAA EAASVFCCAD EAALCDACDH RVHRANKLAG KHRRFSLLNP SASGRSPTST TAPLCDICQE KRGFLFCKED RAILCRECDV PVHTASELTM
101: RHSRYLLTGV RLSSEPAASP APPSEEENSS SFCCSADDAV PAPAAPATSH GGSSGSSSIS EYLTTLPGWH VEDFLVDDAT AEAAAAAAAT SSGISANGPC
201: QGVTRIGGLQ ESAGYPAWMA QQQLCCDGLV AGDASPASRE RWVPQMYADQ LAAGSKRSRT STASSYSYW

Best Arabidopsis Sequence Match ( AT1G75540.1 )
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W

Arabidopsis Description

BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.