Factsheet for Os12t0209200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G028150.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	63.81	62.33
TraesCS6A01G143900.1	Wheat	nucleus	63.33	62.15
TraesCS6B01G172300.1	Wheat	nucleus	61.9	60.75
TraesCS6D01G133100.1	Wheat	nucleus	61.9	60.75
EES15831	Sorghum	nucleus	54.76	46.94
Os04t0540200-01	Rice	nucleus	34.76	29.2
Os02t0646200-01	Rice	nucleus	32.86	25.65
Os02t0606200-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	32.86	25.46
Os06t0152200-01	Rice	nucleus	42.38	24.72
Os09t0527900-01	Rice	cytosol	24.29	24.17
Os05t0204600-01	Rice	cytosol, nucleus, plastid	42.86	23.81
Os01t0202500-01	Rice	cytosol, nucleus	39.05	23.16
Os06t0713000-01	Rice	nucleus	29.52	20.13
Os04t0493000-01	Rice	cytosol	13.33	15.22

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	EntrezGene:4351769	ProteinID:ABA96149.1	EMBL:AK067820	ProteinID:BAF29412.1
ProteinID:BAT16308.1	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009791
GO:GO:0009987	InterPro:IPR000315	EnsemblPlantsGene:Os12g0209200	EnsemblPlants:Os12t0209200-01	PFAM:PF00643	PFscan:PS50119
PANTHER:PTHR31832	PANTHER:PTHR31832:SF4	UniProt:Q2QW41	SMART:SM00336	UniParc:UPI0000681823	RefSeq:XP_015618519.1
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

B-box-containing protein 30Similar to CONSTANS-LIKE a. (Os12t0209200-01)

Coordinates

chr12:+:5699790..5702413

Molecular Weight (calculated)

21630.8 Da

IEP (calculated)

4.851

GRAVY (calculated)

-0.137

Length

210 amino acids

Sequence
(BLAST)

001: MKIGCDACEQ AEAAVLCCAD EAALCRRCDA AVHSANRLAG KHTRVALLLP SSSSAAAGDD DHHPTCDICQ EKTGYFFCLE DRALLCRSCD VAVHTATAHA
101: AAHRRFLITG VRIGGSVDAA AAADVIVSPT SSSIAPAGSA SSNHAGAAGN NNGRSPAPVR FSGGDGGVEP EQQWPWSDVF AADDDDDVSA AMEQCYYHGI
201: SEPHSSSLTG

Best Arabidopsis Sequence Match ( AT1G75540.1 )
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W

Arabidopsis Description

BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.