Factsheet for Os06t0713000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0771100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75540.1	Os02t0771100-01	AT2G32950.1	17965270

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G091180.1	Barley	nucleus	63.64	71.27
TraesCS7D01G379900.1	Wheat	nucleus	64.94	70.18
TraesCS7B01G286300.1	Wheat	nucleus	65.26	64.63
TraesCS7A01G383400.3	Wheat	nucleus	65.58	64.54
Zm00001d036418_P001	Maize	nucleus	53.57	61.34
EER90373	Sorghum	cytosol	58.44	59.02
GSMUA_Achr11P...	Banana	cytosol	35.39	55.05
GSMUA_Achr11P...	Banana	nucleus	31.17	51.89
Zm00001d014765_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	56.82	49.3
Os04t0540200-01	Rice	nucleus	34.74	42.8
Os02t0646200-01	Rice	nucleus	37.01	42.38
Solyc01g110180.2.1	Tomato	nucleus	27.6	41.87
CDY41957	Canola	nucleus	27.92	40.57
KRH51757	Soybean	nucleus	30.84	38.78
CDY42602	Canola	nucleus	29.22	38.46
KRH17384	Soybean	nucleus	34.42	38.41
Bra011879.1-P	Field mustard	nucleus	29.55	38.08
VIT_18s0001g13520.t01	Wine grape	nucleus	36.69	37.29
KRH61078	Soybean	nucleus	32.14	37.22
AT4G39070.1	Thale cress	cytosol	28.9	36.78
CDY12117	Canola	nucleus	28.9	36.78
Bra010713.1-P	Field mustard	nucleus	28.57	36.51
CDX90306	Canola	nucleus	28.57	36.51
KRH51476	Soybean	nucleus	27.27	36.05
PGSC0003DMT400079507	Potato	nucleus	28.25	34.52
Bra008204.1-P	Field mustard	nucleus	32.79	33.44
CDY13564	Canola	nucleus	32.14	32.67
CDY39040	Canola	nucleus	31.17	32.65
CDX73178	Canola	nucleus	33.77	32.3
Solyc04g081020.2.1	Tomato	nucleus	31.17	32.11
CDY47514	Canola	nucleus	33.44	32.09
Bra015835.1-P	Field mustard	nucleus	33.44	32.09
CDX68124	Canola	nucleus	33.12	31.97
PGSC0003DMT400009514	Potato	nucleus	30.84	31.88
Bra003748.1-P	Field mustard	nucleus	32.79	31.66
CDX85903	Canola	nucleus	32.79	31.66
KRH05902	Soybean	nucleus	33.44	31.5
KRH29378	Soybean	nucleus	29.22	31.25
VIT_03s0038g00340.t01	Wine grape	nucleus	30.19	30.79
Solyc12g089240.1.1	Tomato	nucleus	32.79	30.7
AT1G75540.1	Thale cress	nucleus	32.79	30.51
PGSC0003DMT400075652	Potato	nucleus	32.47	30.3
Os12t0209200-01	Rice	cytosol	20.13	29.52
KRH24393	Soybean	nucleus	19.48	29.27
Os02t0606200-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	25.32	28.78
KRH60788	Soybean	nucleus	28.25	27.27
Os09t0527900-01	Rice	cytosol	17.21	25.12
Os06t0152200-01	Rice	nucleus	26.95	23.06
Os01t0202500-01	Rice	cytosol, nucleus	26.3	22.88
Os05t0204600-01	Rice	cytosol, nucleus, plastid	25.65	20.9
Os04t0493000-01	Rice	cytosol	11.04	18.48

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	EntrezGene:4342050	EMBL:AB001884	EMBL:AK105957	ProteinID:BAD54070.1
ProteinID:BAD54569.1	ProteinID:BAF20477.1	ProteinID:BAS99471.1	ProteinID:EEE66347.1	GO:GO:0000989	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009628	GO:GO:0009640	GO:GO:0009791	GO:GO:0009987	InterPro:IPR000315	UniProt:O82114
EnsemblPlantsGene:Os06g0713000	EnsemblPlants:Os06t0713000-01	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF11
SMART:SM00336	UniParc:UPI00000AB56E	RefSeq:XP_015641370.1	InterPro:Znf_B-box	SEG:seg	:

Description

B-box-containing protein 22Zinc finger, B-box domain containing protein. (Os06t0713000-01)

Coordinates

chr6:+:30196103..30197569

Molecular Weight (calculated)

31916.1 Da

IEP (calculated)

4.932

GRAVY (calculated)

-0.149

Length

308 amino acids

Sequence
(BLAST)

001: MRVQCDVCAA EPAAVLCCAD EAALCSACDR RVHRANRLAS KHRRLPLVHP SSSSSGDGGA AAAPLCDVCR EKRGLVFCVE DRAILCADCD EPIHSANDLT
101: AKHTRFLLVG AKLSPAALAE QPLPSSDCSS DDDAAAAATE EEYHSSAAST GAAVSAPLDA SSNGAGGGGG VGGSSISDYL TTICPGWRVE DLLPDDDAFA
201: AAAAQAGKEK DERVPFLDAD LFDVVAGRPE KKGGAWAPHV PHLPAWCLDE VPVVVAASAA PAATPVKAKQ GHVRDSHWSD SDAFAVPEFS PPPPPAKRAR
301: PSSQFWCF

Best Arabidopsis Sequence Match ( AT1G75540.1 )
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W

Arabidopsis Description

BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.