Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400079507 | Potato | nucleus | 95.57 | 76.98 |
| CDY41957 | Canola | nucleus | 51.72 | 49.53 |
| Zm00001d017412_P001 | Maize | nucleus | 34.48 | 49.3 |
| CDY42602 | Canola | nucleus | 54.68 | 47.44 |
| GSMUA_Achr11P... | Banana | cytosol | 45.32 | 46.46 |
| Bra011879.1-P | Field mustard | nucleus | 54.19 | 46.03 |
| GSMUA_Achr11P... | Banana | nucleus | 41.87 | 45.95 |
| AT4G39070.1 | Thale cress | cytosol | 54.68 | 45.87 |
| CDY12117 | Canola | nucleus | 54.68 | 45.87 |
| Bra010713.1-P | Field mustard | nucleus | 54.19 | 45.64 |
| CDX90306 | Canola | nucleus | 54.19 | 45.64 |
| GSMUA_Achr4P05180_001 | Banana | cytosol | 45.32 | 45.32 |
| GSMUA_Achr9P20930_001 | Banana | cytosol | 41.38 | 45.16 |
| KRH51476 | Soybean | nucleus | 51.72 | 45.06 |
| Solyc02g084420.2.1 | Tomato | cytosol | 18.72 | 43.18 |
| TraesCS6B01G285200.1 | Wheat | nucleus | 45.32 | 38.66 |
| TraesCS6A01G239300.1 | Wheat | nucleus | 44.34 | 38.14 |
| Os04t0540200-01 | Rice | nucleus | 46.8 | 38.0 |
| TraesCS6D01G221700.1 | Wheat | nucleus | 44.34 | 37.82 |
| Zm00001d025957_P001 | Maize | nucleus | 47.29 | 37.5 |
| Zm00001d002806_P001 | Maize | nucleus | 47.29 | 37.21 |
| TraesCS2A01G388500.1 | Wheat | nucleus | 46.8 | 36.82 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 47.29 | 36.64 |
| OQU82040 | Sorghum | nucleus | 47.29 | 36.23 |
| Solyc04g081020.2.1 | Tomato | nucleus | 51.72 | 35.12 |
| TraesCS2B01G406600.2 | Wheat | nucleus | 45.32 | 34.72 |
| Os02t0646200-01 | Rice | nucleus | 45.81 | 34.57 |
| VIT_03s0038g00340.t01 | Wine grape | nucleus | 51.23 | 34.44 |
| KRH60788 | Soybean | nucleus | 52.22 | 33.23 |
| KRH29378 | Soybean | nucleus | 46.8 | 32.99 |
| GSMUA_Achr11P... | Banana | nucleus | 42.36 | 32.82 |
| Zm00001d051309_P001 | Maize | nucleus | 44.34 | 32.49 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.34 | 32.37 |
| HORVU2Hr1G092460.9 | Barley | cytosol, mitochondrion, nucleus | 45.32 | 32.28 |
| EES07539 | Sorghum | nucleus | 45.32 | 31.19 |
| Solyc12g089240.1.1 | Tomato | nucleus | 50.25 | 31.0 |
| Solyc06g073180.2.1 | Tomato | nucleus | 35.47 | 30.9 |
| HORVU7Hr1G091180.1 | Barley | nucleus | 38.92 | 28.73 |
| KRH24393 | Soybean | nucleus | 28.57 | 28.29 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 38.92 | 27.72 |
| Os06t0713000-01 | Rice | nucleus | 41.87 | 27.6 |
| TraesCS7B01G286300.1 | Wheat | nucleus | 39.9 | 26.05 |
| Zm00001d036418_P001 | Maize | nucleus | 34.48 | 26.02 |
| TraesCS7A01G383400.3 | Wheat | nucleus | 39.9 | 25.88 |
| EER90373 | Sorghum | cytosol | 37.93 | 25.25 |
| GSMUA_Achr4P04990_001 | Banana | extracellular, golgi | 45.81 | 24.28 |
| Solyc07g062160.2.1 | Tomato | nucleus | 34.98 | 23.83 |
| Solyc12g005420.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 32.51 | 23.4 |
| Zm00001d014765_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 39.41 | 22.54 |
| GSMUA_Achr1P07740_001 | Banana | nucleus | 41.38 | 21.43 |
| Solyc01g110370.2.1 | Tomato | cytosol | 22.17 | 18.67 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | GO:GO:0000989 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009640 | GO:GO:0009719 | GO:GO:0009741 |
| GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010200 | GO:GO:0043565 | GO:GO:0080167 | GO:GO:1900458 |
| GO:GO:2000306 | InterPro:IPR000315 | UniProt:K4B3N1 | PFAM:PF00643 | PFscan:PS50119 | PANTHER:PTHR31832 |
| PANTHER:PTHR31832:SF18 | SMART:SM00336 | EnsemblPlantsGene:Solyc01g110180.2 | EnsemblPlants:Solyc01g110180.2.1 | UniParc:UPI0002768DA7 | InterPro:Znf_B-box |
| SEG:seg | : | : | : | : | : |
Description
B-box zinc finger protein 20 [Source:Projected from Arabidopsis thaliana (AT4G39070) UniProtKB/Swiss-Prot;Acc:Q0IGM7]
Coordinates
chr1:+:96945456..96946926
Molecular Weight (calculated)
22622.1 Da
IEP (calculated)
5.964
GRAVY (calculated)
-0.485
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDVCDK EEASVYCSAD EATLCQSCDY QVHHANKLAS KHLRFSLIHP SFKDSPLCDI CQERRALLFC KEDRAILCKE CDLPIHKANE HTKKHNRFLL
101: SGVQLSSDIL ASNYNNNQNS ISPAGSAASN AGTNNFKALS GNFGMKSNSI SSTTESTHNY FHVDYVQEGS VSTSSISEYL TETLPGWHVE DFLEYPSSSS
201: YEF
101: SGVQLSSDIL ASNYNNNQNS ISPAGSAASN AGTNNFKALS GNFGMKSNSI SSTTESTHNY FHVDYVQEGS VSTSSISEYL TETLPGWHVE DFLEYPSSSS
201: YEF
001: MKIWCAVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TFKDAPLCDI CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS
Arabidopsis Description
BBX20B-box zinc finger protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q0IGM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.