Factsheet for Solyc02g084420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009328	Potato	cytosol	97.73	47.25
CDX72726	Canola	cytosol	85.23	41.9
AT2G21320.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	81.82	41.86
Bra033588.1-P	Field mustard	cytosol	85.23	41.21
Bra010718.1-P	Field mustard	cytosol	84.09	41.11
CDX90301	Canola	cytosol	84.09	41.11
CDY12111	Canola	cytosol	84.09	41.11
KRH28766	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	89.77	40.93
CDX82018	Canola	cytosol	84.09	39.57
Bra031180.1-P	Field mustard	cytosol	82.95	38.83
KRH76689	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	89.77	37.62
Zm00001d021278_P001	Maize	cytosol	85.23	36.41
EER97079	Sorghum	cytosol	85.23	35.55
Os09t0527900-01	Rice	cytosol	82.95	34.6
TraesCS5D01G323400.1	Wheat	cytosol	82.95	34.6
TraesCS5B01G317700.1	Wheat	cytosol	82.95	34.6
TraesCS5A01G317100.1	Wheat	cytosol	82.95	34.6
AT4G38960.3	Thale cress	cytosol	84.09	32.74
Solyc01g110370.2.1	Tomato	cytosol	87.5	31.95
CDY22402	Canola	plastid	56.82	31.06
HORVU5Hr1G081190.1	Barley	cytosol, nucleus, plastid	82.95	26.55
Zm00001d006198_P001	Maize	cytosol	63.64	22.05
GSMUA_Achr6P17960_001	Banana	cytosol	48.86	20.09
Solyc01g110180.2.1	Tomato	nucleus	43.18	18.72
Solyc06g073180.2.1	Tomato	nucleus	45.45	17.17
Solyc12g005420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	45.45	14.18
Solyc07g062160.2.1	Tomato	nucleus	47.73	14.09
Solyc04g081020.2.1	Tomato	nucleus	46.59	13.71
Solyc12g089240.1.1	Tomato	nucleus	45.45	12.16

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640
GO:GO:0009791	GO:GO:0009987	InterPro:IPR000315	UniProt:K4BAV8	PFAM:PF00643	PFscan:PS50119
PANTHER:PTHR31832	PANTHER:PTHR31832:SF5	SMART:SM00336	SUPFAM:SSF57845	EnsemblPlantsGene:Solyc02g084420.2	EnsemblPlants:Solyc02g084420.2.1
UniParc:UPI0002768A72	InterPro:Znf_B-box	:	:	:	:

Description

No Description!

Coordinates

chr2:+:47529657..47531609

Molecular Weight (calculated)

9572.7 Da

IEP (calculated)

5.572

GRAVY (calculated)

0.194

Length

88 amino acids

Sequence
(BLAST)

1: MRTLCDVCES AAAILFCAAD EAALCRACDE KVHMCNKLAS RHVRVGIAKP NEVPRCDICE NSPAFFYCEV DGSSLCLQCD MMVHVGGK

Best Arabidopsis Sequence Match ( AT4G38960.1 )
(BLAST)

001: MRILCDACEN AAAIIFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK

Arabidopsis Description

B-box type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.