CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 4
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g084420.2.1	Tomato	cytosol	40.93	89.77
KRH76689	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	92.75	85.24
PGSC0003DMT400009328	Potato	cytosol	67.36	71.43
AT2G21320.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	56.48	63.37
Bra033588.1-P	Field mustard	cytosol	58.55	62.09
Bra010718.1-P	Field mustard	cytosol	57.51	61.67
CDX90301	Canola	cytosol	57.51	61.67
CDX72726	Canola	cytosol	56.99	61.45
CDY12111	Canola	cytosol	56.99	61.11
KRH24373	Soybean	nucleus	65.8	59.91
Bra031180.1-P	Field mustard	cytosol	57.51	59.04
CDX82018	Canola	cytosol	56.99	58.82
KRH29344	Soybean	nucleus	64.25	58.49
Zm00001d021278_P001	Maize	cytosol	60.62	56.8
Os09t0527900-01	Rice	cytosol	61.14	55.92
EER97079	Sorghum	cytosol	60.62	55.45
TraesCS5B01G317700.1	Wheat	cytosol	59.07	54.03
TraesCS5A01G317100.1	Wheat	cytosol	59.07	54.03
TraesCS5D01G323400.1	Wheat	cytosol	58.55	53.55
CDY22402	Canola	plastid	44.56	53.42
AT4G38960.3	Thale cress	cytosol	56.99	48.67
HORVU5Hr1G081190.1	Barley	cytosol, nucleus, plastid	59.59	41.82
Zm00001d006198_P001	Maize	cytosol	52.33	39.76
GSMUA_Achr6P17960_001	Banana	cytosol	37.82	34.11
KRH24617	Soybean	nucleus	29.02	23.53
KRH29616	Soybean	nucleus	29.02	23.53
KRH23214	Soybean	nucleus	29.02	23.43
KRH51757	Soybean	nucleus	27.46	21.63
KRH51476	Soybean	nucleus	25.39	21.03
KRH21881	Soybean	nucleus	31.61	20.82
KRH37922	Soybean	nucleus	30.57	20.21
KRH61078	Soybean	nucleus	26.94	19.55
KRH24393	Soybean	nucleus	20.73	19.51
KRH17384	Soybean	nucleus	27.46	19.2
KRH29378	Soybean	nucleus	28.5	19.1
KRH27404	Soybean	extracellular, vacuole	31.09	16.04
KRH60788	Soybean	nucleus	26.42	15.99
KRH05902	Soybean	nucleus	26.94	15.9
KRH10122	Soybean	nucleus	28.5	14.03

Protein Annotations

EntrezGene:100795117	MapMan:15.5.1.1	Gene3D:3.30.40.200	EMBL:ACUP02006765	EnsemblPlantsGene:GLYMA_11G074900	GO:GO:0000989
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009791	GO:GO:0009987	UniProt:I1LHZ2
InterPro:IPR000315	EnsemblPlants:KRH28766	ProteinID:KRH28766	ProteinID:KRH28766.1	PFAM:PF00643	PFscan:PS50119
PANTHER:PTHR31832	PANTHER:PTHR31832:SF17	SMART:SM00336	SUPFAM:SSF57845	UniParc:UPI00023CC46A	InterPro:Znf_B-box

Description

hypothetical protein

Coordinates

chr11:-:5593535..5596130

Molecular Weight (calculated)

21375.7 Da

IEP (calculated)

7.356

GRAVY (calculated)

-0.544

Length

193 amino acids

Sequence
(BLAST)

001: MRTLCDACES AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLASP SDVPRCDICE NAPAFFYCET DGSSLCLQCD MIVHVGGKRT HGRYLLFRQR
101: VEFPGDKSSH AENPASQALE PGEAKRGQNP LPKLKMGEKQ QNHRMPMVPT PGPDADGQTK METKMIDLNM KPNRIHEQAS NNQCSWMKVE PFP

Best Arabidopsis Sequence Match ( AT2G21320.1 )
(BLAST)

001: MRILCDACES AAAIVFCAAD EAALCCSCDE KVHKCNKLAS RHLRVGLADP SNAPSCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HRRFLLLRQR
101: IEFPGDKPNH ADQLGLRCQK ASSGRGQESN GNGDHDHNMI DLNSNPQRVH EPGSHNQEEG IDVNNANNHE HE

Arabidopsis Description

BBX18B-box zinc finger protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJU5]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.