CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51476	Soybean	nucleus	61.13	83.69
Solyc01g110180.2.1	Tomato	nucleus	33.23	52.22
CDY41957	Canola	nucleus	33.86	50.94
Zm00001d017412_P001	Maize	nucleus	21.63	48.59
CDY42602	Canola	nucleus	34.8	47.44
CDY12117	Canola	nucleus	35.74	47.11
AT4G39070.1	Thale cress	cytosol	35.74	47.11
Bra011879.1-P	Field mustard	nucleus	35.11	46.86
Bra010713.1-P	Field mustard	nucleus	35.11	46.47
CDX90306	Canola	nucleus	35.11	46.47
GSMUA_Achr9P20930_001	Banana	cytosol	26.65	45.7
GSMUA_Achr11P...	Banana	cytosol	27.9	44.95
GSMUA_Achr4P05180_001	Banana	cytosol	28.53	44.83
GSMUA_Achr11P...	Banana	nucleus	25.71	44.32
PGSC0003DMT400079507	Potato	nucleus	34.48	43.65
KRH51757	Soybean	nucleus	32.92	42.86
KRH17384	Soybean	nucleus	36.36	42.03
KRH29378	Soybean	nucleus	35.42	39.24
KRH61078	Soybean	nucleus	32.6	39.1
TraesCS6A01G239300.1	Wheat	nucleus	28.21	38.14
TraesCS6B01G285200.1	Wheat	nucleus	28.21	37.82
TraesCS6D01G221700.1	Wheat	nucleus	28.21	37.82
VIT_03s0038g00340.t01	Wine grape	nucleus	35.11	37.09
Zm00001d025957_P001	Maize	nucleus	29.47	36.72
KRH24393	Soybean	nucleus	23.51	36.59
Zm00001d002806_P001	Maize	nucleus	29.15	36.05
KRH05902	Soybean	nucleus	36.68	35.78
TraesCS2A01G388500.1	Wheat	nucleus	28.84	35.66
TraesCS2D01G386300.1	Wheat	nucleus	29.15	35.5
OQU82040	Sorghum	nucleus	29.47	35.47
Os04t0540200-01	Rice	nucleus	27.59	35.2
TraesCS2B01G406600.2	Wheat	nucleus	28.21	33.96
Os02t0646200-01	Rice	nucleus	28.53	33.83
GSMUA_Achr11P...	Banana	nucleus	27.59	33.59
GSMUA_AchrUn_...	Banana	nucleus	28.84	33.09
Zm00001d051309_P001	Maize	nucleus	27.59	31.77
HORVU2Hr1G092460.9	Barley	cytosol, mitochondrion, nucleus	27.9	31.23
EES07539	Sorghum	nucleus	28.53	30.85
HORVU7Hr1G091180.1	Barley	nucleus	26.02	30.18
TraesCS7D01G379900.1	Wheat	nucleus	26.33	29.47
KRH29616	Soybean	nucleus	21.63	28.99
KRH24617	Soybean	nucleus	21.63	28.99
Zm00001d036418_P001	Maize	nucleus	24.14	28.62
Os06t0713000-01	Rice	nucleus	27.27	28.25
KRH23214	Soybean	nucleus	20.69	27.62
EER90373	Sorghum	cytosol	26.33	27.54
TraesCS7A01G383400.3	Wheat	nucleus	26.96	27.48
TraesCS7B01G286300.1	Wheat	nucleus	26.65	27.33
KRH28766	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	15.99	26.42
KRH37922	Soybean	nucleus	24.14	26.37
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	31.35	26.11
KRH21881	Soybean	nucleus	23.51	25.6
KRH24373	Soybean	nucleus	16.61	25.0
KRH76689	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	15.99	24.29
KRH29344	Soybean	nucleus	15.99	24.06
Zm00001d014765_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	26.65	23.94
GSMUA_Achr1P07740_001	Banana	nucleus	27.9	22.7
KRH27404	Soybean	extracellular, vacuole	23.51	20.05
KRH10122	Soybean	nucleus	21.0	17.09

Protein Annotations

EntrezGene:100800981	MapMan:15.5.1.1	Gene3D:3.30.40.200	EMBL:ACUP02002140	EnsemblPlantsGene:GLYMA_04G009200	GO:GO:0000989
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009791	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	UniProt:I1JSK5	InterPro:IPR000315	EnsemblPlants:KRH60788	ProteinID:KRH60788	ProteinID:KRH60788.1
PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF18	SMART:SM00336	TMHMM:TMhelix
UniParc:UPI00023C1B0A	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:734314..736030

Molecular Weight (calculated)

36522.5 Da

IEP (calculated)

7.706

GRAVY (calculated)

-0.145

Length

319 amino acids

Sequence
(BLAST)

001: MKIQCAVCDK VEASVFCSAD EAALCHSCDR TIHHANKLAT KHPRFSLHYP TSQDFPLCDI CQERRAYLFC QEDRALLCRE CDVPIHRANE HTQKHNRFLL
101: TGVKLSGTSL DPAASSTNCT HGSEGRNNAR SRMNRPRSSV SNEENASNSS CKVEDNVASD TGSVSTSSIS EYLIETIPGY CFEDLLDASF APNGFCKNQN
201: YDRHRRFRTK IFKLLGRVWF ELRRFQNLNA IDDQLFVKIC WKISSFVFVI CISFWAPCCI LYDFFFILYS RPLFRPLILV FFSIFIGLIN NIFWGGVHAF
301: IDMNMNSLNN ATEYYVPLS

Best Arabidopsis Sequence Match ( AT4G39070.1 )
(BLAST)

001: MKIWCAVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TFKDAPLCDI CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS

Arabidopsis Description

BBX20B-box zinc finger protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q0IGM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.