Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 3
- golgi 3
- plasma membrane 3
- endoplasmic reticulum 3
- vacuole 3
- nucleus 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75540.1 | KRH14801 | AT2G32950.1 | 17965270 |
| AT1G75540.1 | KRH73341 | AT2G32950.1 | 17965270 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH17384 | Soybean | nucleus | 77.98 | 92.39 |
| KRH51757 | Soybean | nucleus | 43.73 | 58.37 |
| KRH61078 | Soybean | nucleus | 45.26 | 55.64 |
| VIT_18s0001g13520.t01 | Wine grape | nucleus | 50.76 | 54.79 |
| PGSC0003DMT400009514 | Potato | nucleus | 48.62 | 53.36 |
| Solyc04g081020.2.1 | Tomato | nucleus | 48.01 | 52.51 |
| Zm00001d017412_P001 | Maize | nucleus | 22.63 | 52.11 |
| GSMUA_Achr4P05180_001 | Banana | cytosol | 31.8 | 51.23 |
| GSMUA_Achr9P20930_001 | Banana | cytosol | 28.13 | 49.46 |
| Bra008204.1-P | Field mustard | nucleus | 44.95 | 48.68 |
| KRH51476 | Soybean | nucleus | 34.56 | 48.5 |
| GSMUA_Achr11P... | Banana | nucleus | 27.22 | 48.11 |
| CDY39040 | Canola | nucleus | 43.12 | 47.96 |
| PGSC0003DMT400075652 | Potato | nucleus | 48.01 | 47.58 |
| CDY13564 | Canola | nucleus | 43.73 | 47.19 |
| Bra015835.1-P | Field mustard | nucleus | 45.87 | 46.73 |
| CDY47514 | Canola | nucleus | 45.87 | 46.73 |
| GSMUA_Achr11P... | Banana | cytosol | 28.13 | 46.46 |
| CDX68124 | Canola | nucleus | 45.26 | 46.4 |
| CDX85903 | Canola | nucleus | 45.26 | 46.4 |
| Solyc12g089240.1.1 | Tomato | nucleus | 46.48 | 46.2 |
| Bra003748.1-P | Field mustard | nucleus | 44.95 | 46.08 |
| CDX73178 | Canola | nucleus | 45.26 | 45.96 |
| AT1G75540.1 | Thale cress | nucleus | 44.65 | 44.11 |
| TraesCS6A01G239300.1 | Wheat | nucleus | 31.8 | 44.07 |
| TraesCS6B01G285200.1 | Wheat | nucleus | 31.8 | 43.7 |
| TraesCS6D01G221700.1 | Wheat | nucleus | 31.8 | 43.7 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.39 | 42.81 |
| GSMUA_Achr11P... | Banana | nucleus | 34.25 | 42.75 |
| Os04t0540200-01 | Rice | nucleus | 30.89 | 40.4 |
| Zm00001d025957_P001 | Maize | nucleus | 31.5 | 40.23 |
| Os02t0646200-01 | Rice | nucleus | 33.03 | 40.15 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 31.8 | 39.69 |
| TraesCS2A01G388500.1 | Wheat | nucleus | 31.19 | 39.53 |
| Zm00001d002806_P001 | Maize | nucleus | 31.19 | 39.53 |
| TraesCS2B01G406600.2 | Wheat | nucleus | 31.5 | 38.87 |
| OQU82040 | Sorghum | nucleus | 30.58 | 37.74 |
| KRH29378 | Soybean | nucleus | 33.03 | 37.5 |
| HORVU7Hr1G091180.1 | Barley | nucleus | 31.19 | 37.09 |
| Zm00001d051309_P001 | Maize | nucleus | 31.19 | 36.82 |
| KRH60788 | Soybean | nucleus | 35.78 | 36.68 |
| EES07539 | Sorghum | nucleus | 32.72 | 36.27 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 31.19 | 35.79 |
| HORVU2Hr1G092460.9 | Barley | cytosol, mitochondrion, nucleus | 31.19 | 35.79 |
| TraesCS7B01G286300.1 | Wheat | nucleus | 32.11 | 33.76 |
| Os06t0713000-01 | Rice | nucleus | 31.5 | 33.44 |
| KRH29616 | Soybean | nucleus | 24.16 | 33.19 |
| KRH24393 | Soybean | nucleus | 20.8 | 33.17 |
| Zm00001d036418_P001 | Maize | nucleus | 27.22 | 33.09 |
| TraesCS7A01G383400.3 | Wheat | nucleus | 31.5 | 32.91 |
| KRH24617 | Soybean | nucleus | 23.55 | 32.35 |
| KRH23214 | Soybean | nucleus | 23.55 | 32.22 |
| EER90373 | Sorghum | cytosol | 28.75 | 30.82 |
| KRH37922 | Soybean | nucleus | 26.61 | 29.79 |
| GSMUA_Achr4P04990_001 | Banana | extracellular, golgi | 34.25 | 29.24 |
| KRH21881 | Soybean | nucleus | 25.99 | 29.01 |
| Zm00001d014765_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 30.58 | 28.17 |
| GSMUA_Achr1P07740_001 | Banana | nucleus | 33.64 | 28.06 |
| KRH28766 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 15.9 | 26.94 |
| KRH24373 | Soybean | nucleus | 16.21 | 25.0 |
| KRH76689 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 15.9 | 24.76 |
| KRH29344 | Soybean | nucleus | 15.6 | 24.06 |
| KRH27404 | Soybean | extracellular, vacuole | 26.61 | 23.26 |
| KRH10122 | Soybean | nucleus | 25.38 | 21.17 |
Protein Annotations
| EntrezGene:100807827 | MapMan:15.5.1.1 | Gene3D:3.30.40.200 | EMBL:ACUP02010784 | EnsemblPlantsGene:GLYMA_17G255100 | GO:GO:0000989 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009640 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0046872 |
| InterPro:IPR000315 | UniProt:K7MNZ7 | EnsemblPlants:KRH05902 | ProteinID:KRH05902 | ProteinID:KRH05902.1 | PFAM:PF00643 |
| PFscan:PS50119 | PANTHER:PTHR31832 | PANTHER:PTHR31832:SF6 | SMART:SM00336 | UniParc:UPI00023DB684 | InterPro:Znf_B-box |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr17:+:40923270..40925121
Molecular Weight (calculated)
36456.0 Da
IEP (calculated)
6.615
GRAVY (calculated)
-0.362
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGSFIIVVL PPLPFDHIYP SQSLPTFYEH WPTPTLPLFS LSSFKLLTPM KIQCDVCNKH EASVFCTADE AALCDGCDHR VHHANKLASK HQRFSLLRPS
101: PKQHPLCDIC QERRAFTFCQ QDRAILCKEC DVSIHSANEH TLKHDRFLLT GVKLSASAML RSSETTSDSN SNPSLLNFSH QTTLLPPSST TTTTTSNNNN
201: NKVAVEGTGS TSASSISEYL IETLPGWQVE DFLDSYSVPF GFCKNDEVLP RFDGEMEGHL SSFSTENMGI WVPQAPPTLM CSSQMDRVIV HGETNIKGSS
301: RSRLKDDNFT VPQISPPSNS KRARFLW
101: PKQHPLCDIC QERRAFTFCQ QDRAILCKEC DVSIHSANEH TLKHDRFLLT GVKLSASAML RSSETTSDSN SNPSLLNFSH QTTLLPPSST TTTTTSNNNN
201: NKVAVEGTGS TSASSISEYL IETLPGWQVE DFLDSYSVPF GFCKNDEVLP RFDGEMEGHL SSFSTENMGI WVPQAPPTLM CSSQMDRVIV HGETNIKGSS
301: RSRLKDDNFT VPQISPPSNS KRARFLW
001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
Arabidopsis Description
BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.