Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400036075 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75540.1 | PGSC0003DMT400036075 | AT2G32950.1 | 17965270 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g081020.2.1 | Tomato | nucleus | 94.97 | 94.65 |
| KRH17384 | Soybean | nucleus | 52.35 | 56.52 |
| PGSC0003DMT400075652 | Potato | nucleus | 62.42 | 56.36 |
| VIT_18s0001g13520.t01 | Wine grape | nucleus | 56.38 | 55.45 |
| KRH51757 | Soybean | nucleus | 44.63 | 54.29 |
| KRH61078 | Soybean | nucleus | 45.3 | 50.75 |
| GSMUA_Achr9P20930_001 | Banana | cytosol | 31.54 | 50.54 |
| Zm00001d017412_P001 | Maize | nucleus | 23.49 | 49.3 |
| GSMUA_Achr11P... | Banana | cytosol | 32.55 | 48.99 |
| Bra008204.1-P | Field mustard | nucleus | 49.33 | 48.68 |
| KRH05902 | Soybean | nucleus | 53.36 | 48.62 |
| GSMUA_Achr4P05180_001 | Banana | cytosol | 32.89 | 48.28 |
| CDY13564 | Canola | nucleus | 48.99 | 48.18 |
| GSMUA_Achr11P... | Banana | nucleus | 29.87 | 48.11 |
| CDY39040 | Canola | nucleus | 46.98 | 47.62 |
| CDX68124 | Canola | nucleus | 50.34 | 47.02 |
| Bra015835.1-P | Field mustard | nucleus | 50.34 | 46.73 |
| CDY47514 | Canola | nucleus | 50.34 | 46.73 |
| CDX85903 | Canola | nucleus | 50.0 | 46.71 |
| Bra003748.1-P | Field mustard | nucleus | 50.0 | 46.71 |
| CDX73178 | Canola | nucleus | 50.0 | 46.27 |
| AT1G75540.1 | Thale cress | nucleus | 48.99 | 44.11 |
| PGSC0003DMT400079507 | Potato | nucleus | 37.25 | 44.05 |
| TraesCS6A01G239300.1 | Wheat | nucleus | 34.56 | 43.64 |
| TraesCS6D01G221700.1 | Wheat | nucleus | 34.56 | 43.28 |
| TraesCS6B01G285200.1 | Wheat | nucleus | 34.56 | 43.28 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.93 | 42.81 |
| Os04t0540200-01 | Rice | nucleus | 35.57 | 42.4 |
| GSMUA_Achr11P... | Banana | nucleus | 36.91 | 41.98 |
| TraesCS2A01G388500.1 | Wheat | nucleus | 35.57 | 41.09 |
| Zm00001d025957_P001 | Maize | nucleus | 35.23 | 41.02 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 35.91 | 40.84 |
| Zm00001d002806_P001 | Maize | nucleus | 35.23 | 40.7 |
| TraesCS2B01G406600.2 | Wheat | nucleus | 35.57 | 40.0 |
| Os02t0646200-01 | Rice | nucleus | 35.91 | 39.78 |
| OQU82040 | Sorghum | nucleus | 34.56 | 38.87 |
| Zm00001d051309_P001 | Maize | nucleus | 34.9 | 37.55 |
| EES07539 | Sorghum | nucleus | 36.91 | 37.29 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 33.89 | 35.44 |
| HORVU2Hr1G092460.9 | Barley | cytosol, mitochondrion, nucleus | 33.89 | 35.44 |
| HORVU7Hr1G091180.1 | Barley | nucleus | 31.88 | 34.55 |
| PGSC0003DMT400069498 | Potato | nucleus | 26.17 | 33.48 |
| Zm00001d036418_P001 | Maize | nucleus | 29.87 | 33.09 |
| TraesCS7B01G286300.1 | Wheat | nucleus | 34.23 | 32.8 |
| TraesCS7A01G383400.3 | Wheat | nucleus | 34.23 | 32.59 |
| PGSC0003DMT400018196 | Potato | nucleus | 31.21 | 31.21 |
| Os06t0713000-01 | Rice | nucleus | 31.88 | 30.84 |
| GSMUA_Achr1P07740_001 | Banana | nucleus | 39.26 | 29.85 |
| EER90373 | Sorghum | cytosol | 30.2 | 29.51 |
| PGSC0003DMT400009328 | Potato | cytosol | 17.79 | 29.12 |
| PGSC0003DMT400048964 | Potato | nucleus | 28.86 | 28.76 |
| Zm00001d014765_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 33.22 | 27.89 |
| PGSC0003DMT400008044 | Potato | cytosol | 19.8 | 27.83 |
| GSMUA_Achr4P04990_001 | Banana | extracellular, golgi | 35.57 | 27.68 |
Protein Annotations
| EntrezGene:102582815 | MapMan:15.5.1.1 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | GO:GO:0046872 | InterPro:IPR000315 | EMBL:KX576529 |
| UniProt:M0ZWE4 | PFAM:PF00643 | EnsemblPlantsGene:PGSC0003DMG400003711 | PGSC:PGSC0003DMG400003711 | EnsemblPlants:PGSC0003DMT400009514 | PFscan:PS50119 |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF6 | SMART:SM00336 | UniParc:UPI0002957AF3 | RefSeq:XP_006342001.1 | InterPro:Znf_B-box |
| SEG:seg | : | : | : | : | : |
Description
COL domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400003711]
Coordinates
chr4:+:70449684..70451592
Molecular Weight (calculated)
33204.9 Da
IEP (calculated)
7.123
GRAVY (calculated)
-0.487
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDVCNN NEASVFCVAD EAALCDSCDH RVHHANKLAS KHQRFSLIQP SPKQIPVCDI CQERRAFLFC QQDRAILCRE CDVSIHKANE HTQKHNRFLL
101: TGVKISANSS LYTSSESASA TSCSANQDSV TNLNKSQTCT KKTLPVSGSV PQQVSVAVNI GENSYTSSIS EYLEMLPGWH VEELLNSSTI PTNGFCKIGD
201: NDVFPIWDTE IESTMNSFSP ENLGIWVPQA PPPPTPQKNQ NQVFPQNINF GGQIEFKNMK EVTSNKSSRK WRDDNSFAVP QIIPSSSSIS FKRSRTLW
101: TGVKISANSS LYTSSESASA TSCSANQDSV TNLNKSQTCT KKTLPVSGSV PQQVSVAVNI GENSYTSSIS EYLEMLPGWH VEELLNSSTI PTNGFCKIGD
201: NDVFPIWDTE IESTMNSFSP ENLGIWVPQA PPPPTPQKNQ NQVFPQNINF GGQIEFKNMK EVTSNKSSRK WRDDNSFAVP QIIPSSSSIS FKRSRTLW
001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
Arabidopsis Description
BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.