Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g110180.2.1 | Tomato | nucleus | 76.98 | 95.57 |
| CDY41957 | Canola | nucleus | 42.46 | 50.47 |
| Zm00001d017412_P001 | Maize | nucleus | 27.78 | 49.3 |
| CDY42602 | Canola | nucleus | 44.05 | 47.44 |
| GSMUA_Achr11P... | Banana | cytosol | 36.9 | 46.97 |
| Bra011879.1-P | Field mustard | nucleus | 44.44 | 46.86 |
| CDY12117 | Canola | nucleus | 44.84 | 46.69 |
| AT4G39070.1 | Thale cress | cytosol | 44.84 | 46.69 |
| Bra010713.1-P | Field mustard | nucleus | 44.44 | 46.47 |
| CDX90306 | Canola | nucleus | 44.44 | 46.47 |
| GSMUA_Achr11P... | Banana | nucleus | 33.73 | 45.95 |
| KRH51476 | Soybean | nucleus | 42.06 | 45.49 |
| GSMUA_Achr9P20930_001 | Banana | cytosol | 33.33 | 45.16 |
| GSMUA_Achr4P05180_001 | Banana | cytosol | 36.11 | 44.83 |
| Os04t0540200-01 | Rice | nucleus | 38.49 | 38.8 |
| TraesCS6B01G285200.1 | Wheat | nucleus | 36.11 | 38.24 |
| Zm00001d002806_P001 | Maize | nucleus | 38.89 | 37.98 |
| Zm00001d025957_P001 | Maize | nucleus | 38.49 | 37.89 |
| TraesCS6A01G239300.1 | Wheat | nucleus | 35.32 | 37.71 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 38.89 | 37.4 |
| TraesCS6D01G221700.1 | Wheat | nucleus | 35.32 | 37.4 |
| PGSC0003DMT400009514 | Potato | nucleus | 44.05 | 37.25 |
| TraesCS2A01G388500.1 | Wheat | nucleus | 38.1 | 37.21 |
| OQU82040 | Sorghum | nucleus | 38.89 | 36.98 |
| VIT_03s0038g00340.t01 | Wine grape | nucleus | 42.46 | 35.43 |
| TraesCS2B01G406600.2 | Wheat | nucleus | 36.9 | 35.09 |
| KRH29378 | Soybean | nucleus | 40.08 | 35.07 |
| Os02t0646200-01 | Rice | nucleus | 37.3 | 34.94 |
| KRH60788 | Soybean | nucleus | 43.65 | 34.48 |
| GSMUA_Achr11P... | Banana | nucleus | 35.71 | 34.35 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.9 | 33.45 |
| Zm00001d051309_P001 | Maize | nucleus | 36.11 | 32.85 |
| HORVU2Hr1G092460.9 | Barley | cytosol, mitochondrion, nucleus | 36.9 | 32.63 |
| EES07539 | Sorghum | nucleus | 37.7 | 32.2 |
| PGSC0003DMT400075652 | Potato | nucleus | 41.67 | 31.82 |
| PGSC0003DMT400069498 | Potato | nucleus | 29.37 | 31.76 |
| KRH24393 | Soybean | nucleus | 25.0 | 30.73 |
| HORVU7Hr1G091180.1 | Barley | nucleus | 32.54 | 29.82 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 32.54 | 28.77 |
| Os06t0713000-01 | Rice | nucleus | 34.52 | 28.25 |
| TraesCS7B01G286300.1 | Wheat | nucleus | 33.33 | 27.01 |
| TraesCS7A01G383400.3 | Wheat | nucleus | 33.33 | 26.84 |
| Zm00001d036418_P001 | Maize | nucleus | 28.17 | 26.39 |
| PGSC0003DMT400009328 | Potato | cytosol | 19.05 | 26.37 |
| EER90373 | Sorghum | cytosol | 30.95 | 25.57 |
| GSMUA_Achr4P04990_001 | Banana | extracellular, golgi | 36.9 | 24.28 |
| PGSC0003DMT400018196 | Potato | nucleus | 28.57 | 24.16 |
| Zm00001d014765_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 32.54 | 23.1 |
| PGSC0003DMT400048964 | Potato | nucleus | 27.38 | 23.08 |
| GSMUA_Achr1P07740_001 | Banana | nucleus | 34.52 | 22.19 |
| PGSC0003DMT400008044 | Potato | cytosol | 18.25 | 21.7 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008270 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009741 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0010200 | GO:GO:0043565 | GO:GO:0080167 | GO:GO:1900458 | GO:GO:2000306 |
| InterPro:IPR000315 | UniProt:M1D1Y5 | PFAM:PF00643 | EnsemblPlantsGene:PGSC0003DMG400030958 | PGSC:PGSC0003DMG400030958 | EnsemblPlants:PGSC0003DMT400079507 |
| PFscan:PS50119 | PANTHER:PTHR31832 | PANTHER:PTHR31832:SF18 | SMART:SM00336 | TMHMM:TMhelix | UniParc:UPI0002953278 |
| InterPro:Znf_B-box | : | : | : | : | : |
Description
Zinc finger (B-box type) family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030958]
Coordinates
chr1:+:86524640..86526577
Molecular Weight (calculated)
27961.7 Da
IEP (calculated)
5.516
GRAVY (calculated)
-0.244
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDVCDK EEASVYCSAD EATLCQSCDY QVHHANKLAS KHLRFSLIHP SFKDSPLCDI CQERRALLFC KEDRAILCKE CDLPIHKANE HTKKHNRFLL
101: SGVQLSSDVL ASNSNNQNSI SPTGSAASNA GTNNFKARSG NFGMKSNSIS STTESTPNYF QVDYHVQEGS VSTSSISEYL TETLPGWHVE DFLEYPSSSS
201: YDLGYFLFCF VGDQSFCNAS GIALCLLPAL IIEYGIPICF KYSLPNQFFM GD
101: SGVQLSSDVL ASNSNNQNSI SPTGSAASNA GTNNFKARSG NFGMKSNSIS STTESTPNYF QVDYHVQEGS VSTSSISEYL TETLPGWHVE DFLEYPSSSS
201: YDLGYFLFCF VGDQSFCNAS GIALCLLPAL IIEYGIPICF KYSLPNQFFM GD
001: MKIWCAVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TFKDAPLCDI CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS
Arabidopsis Description
BBX20B-box zinc finger protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q0IGM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.