Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41957 | Canola | nucleus | 82.43 | 92.92 |
| Bra010713.1-P | Field mustard | nucleus | 87.45 | 86.72 |
| CDY42602 | Canola | nucleus | 79.92 | 81.62 |
| Solyc01g110180.2.1 | Tomato | nucleus | 46.03 | 54.19 |
| Zm00001d017412_P001 | Maize | nucleus | 30.96 | 52.11 |
| GSMUA_Achr11P... | Banana | nucleus | 39.33 | 50.81 |
| GSMUA_Achr11P... | Banana | cytosol | 41.42 | 50.0 |
| GSMUA_Achr9P20930_001 | Banana | cytosol | 38.49 | 49.46 |
| GSMUA_Achr4P05180_001 | Banana | cytosol | 40.17 | 47.29 |
| KRH51476 | Soybean | nucleus | 46.03 | 47.21 |
| PGSC0003DMT400079507 | Potato | nucleus | 46.86 | 44.44 |
| Zm00001d025957_P001 | Maize | nucleus | 41.84 | 39.06 |
| Zm00001d002806_P001 | Maize | nucleus | 41.84 | 38.76 |
| TraesCS6B01G285200.1 | Wheat | nucleus | 38.49 | 38.66 |
| TraesCS6A01G239300.1 | Wheat | nucleus | 37.66 | 38.14 |
| OQU82040 | Sorghum | nucleus | 42.26 | 38.11 |
| TraesCS6D01G221700.1 | Wheat | nucleus | 37.66 | 37.82 |
| Os04t0540200-01 | Rice | nucleus | 39.33 | 37.6 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.51 | 37.41 |
| GSMUA_Achr11P... | Banana | nucleus | 40.59 | 37.02 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 40.17 | 36.64 |
| TraesCS2A01G388500.1 | Wheat | nucleus | 39.33 | 36.43 |
| VIT_03s0038g00340.t01 | Wine grape | nucleus | 46.03 | 36.42 |
| Bra008204.1-P | Field mustard | nucleus | 46.03 | 36.42 |
| KRH29378 | Soybean | nucleus | 43.1 | 35.76 |
| KRH60788 | Soybean | nucleus | 46.86 | 35.11 |
| Os02t0646200-01 | Rice | nucleus | 39.33 | 34.94 |
| Bra003748.1-P | Field mustard | nucleus | 46.44 | 34.8 |
| TraesCS2B01G406600.2 | Wheat | nucleus | 38.49 | 34.72 |
| Zm00001d051309_P001 | Maize | nucleus | 40.17 | 34.66 |
| Bra015835.1-P | Field mustard | nucleus | 46.03 | 34.27 |
| EES07539 | Sorghum | nucleus | 41.0 | 33.22 |
| HORVU7Hr1G091180.1 | Barley | nucleus | 38.08 | 33.09 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 38.49 | 32.28 |
| HORVU2Hr1G092460.9 | Barley | cytosol, mitochondrion, nucleus | 38.08 | 31.93 |
| KRH24393 | Soybean | nucleus | 27.2 | 31.71 |
| Zm00001d036418_P001 | Maize | nucleus | 35.15 | 31.23 |
| Bra032441.1-P | Field mustard | nucleus | 29.71 | 30.34 |
| TraesCS7B01G286300.1 | Wheat | nucleus | 39.33 | 30.23 |
| EER90373 | Sorghum | cytosol | 38.49 | 30.16 |
| TraesCS7A01G383400.3 | Wheat | nucleus | 39.33 | 30.03 |
| Os06t0713000-01 | Rice | nucleus | 38.08 | 29.55 |
| Bra015469.1-P | Field mustard | nucleus | 29.71 | 29.22 |
| Bra030635.1-P | Field mustard | nucleus | 29.29 | 29.05 |
| Bra010718.1-P | Field mustard | cytosol | 21.34 | 28.33 |
| Bra033588.1-P | Field mustard | cytosol | 20.92 | 27.47 |
| Bra031180.1-P | Field mustard | cytosol | 20.92 | 26.6 |
| Zm00001d014765_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 38.91 | 26.2 |
| GSMUA_Achr4P04990_001 | Banana | extracellular, golgi | 41.0 | 25.59 |
| Bra021734.1-P | Field mustard | nucleus | 25.52 | 25.42 |
| Bra018249.1-P | Field mustard | nucleus | 25.52 | 25.1 |
| GSMUA_Achr1P07740_001 | Banana | nucleus | 40.59 | 24.74 |
| Bra035051.1-P | Field mustard | nucleus | 30.13 | 24.66 |
| Bra003640.1-P | Field mustard | nucleus | 29.71 | 24.65 |
| Bra008371.1-P | Field mustard | nucleus | 28.87 | 23.71 |
Protein Annotations
| EnsemblPlants:Bra011879.1 | EnsemblPlants:Bra011879.1-P | EnsemblPlantsGene:Bra011879 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | GO:GO:0046872 | InterPro:IPR000315 |
| InterPro:Znf_B-box | PANTHER:PTHR31832 | PANTHER:PTHR31832:SF18 | PFAM:PF00643 | PFscan:PS50119 | SEG:seg |
| SMART:SM00336 | SUPFAM:SSF57845 | UniParc:UPI0002545E7D | UniProt:M4D5X2 | MapMan:15.5.1.1 | : |
Description
AT4G39070 (E=4e-092) | zinc finger (B-box type) family protein
Coordinates
chrA01:-:108402..111063
Molecular Weight (calculated)
26249.3 Da
IEP (calculated)
5.324
GRAVY (calculated)
-0.551
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIWCDVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TPKDAPLCDI CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL
101: TGIKLSASPS AYPRASNSGA TLGQAKTRPK SVSGEVPSSA SSEVFASSPS TTTSNYYYGL EETYQQASDS GSGSGSGSIS EYLMETLPGW RVEDLLEDPS
201: CVSYEDNNNI FTKINNNGVY DGSSSQYQHQ GFWEQKPFS
101: TGIKLSASPS AYPRASNSGA TLGQAKTRPK SVSGEVPSSA SSEVFASSPS TTTSNYYYGL EETYQQASDS GSGSGSGSIS EYLMETLPGW RVEDLLEDPS
201: CVSYEDNNNI FTKINNNGVY DGSSSQYQHQ GFWEQKPFS
001: MKIWCAVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TFKDAPLCDI CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS
Arabidopsis Description
BBX20B-box zinc finger protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q0IGM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.