Factsheet for Zm00001d014765_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018207_P001
Zm00001d052138_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75540.1	Zm00001d018207_P001	AT2G32950.1	17965270
AT1G75540.1	Zm00001d052138_P004	AT2G32950.1	17965270

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036418_P001	Maize	nucleus	64.23	84.76
EER90373	Sorghum	cytosol	69.3	80.66
TraesCS7D01G379900.1	Wheat	nucleus	51.27	63.86
HORVU7Hr1G091180.1	Barley	nucleus	49.01	63.27
TraesCS7B01G286300.1	Wheat	nucleus	51.55	58.84
TraesCS7A01G383400.3	Wheat	nucleus	50.99	57.83
Os06t0713000-01	Rice	nucleus	49.3	56.82
Zm00001d017412_P001	Maize	nucleus	21.41	53.52
GSMUA_Achr11P...	Banana	cytosol	28.45	51.01
GSMUA_Achr11P...	Banana	nucleus	26.48	50.81
Zm00001d025957_P001	Maize	nucleus	30.99	42.97
Zm00001d002806_P001	Maize	nucleus	30.14	41.47
CDY41957	Canola	nucleus	24.51	41.04
Solyc01g110180.2.1	Tomato	nucleus	22.54	39.41
Zm00001d051309_P001	Maize	nucleus	30.42	38.99
Bra011879.1-P	Field mustard	nucleus	26.2	38.91
KRH51757	Soybean	nucleus	26.76	38.78
CDY42602	Canola	nucleus	25.35	38.46
KRH51476	Soybean	nucleus	24.51	37.34
KRH17384	Soybean	nucleus	29.01	37.32
CDY12117	Canola	nucleus	25.35	37.19
CDX90306	Canola	nucleus	25.07	36.93
Bra010713.1-P	Field mustard	nucleus	25.07	36.93
KRH61078	Soybean	nucleus	27.61	36.84
AT4G39070.1	Thale cress	cytosol	25.07	36.78
VIT_18s0001g13520.t01	Wine grape	nucleus	29.86	34.98
PGSC0003DMT400009514	Potato	nucleus	27.89	33.22
Solyc04g081020.2.1	Tomato	nucleus	27.61	32.78
PGSC0003DMT400079507	Potato	nucleus	23.1	32.54
Bra008204.1-P	Field mustard	nucleus	26.76	31.46
KRH29378	Soybean	nucleus	25.35	31.25
Solyc12g089240.1.1	Tomato	nucleus	28.73	31.0
CDY39040	Canola	nucleus	25.63	30.95
CDX73178	Canola	nucleus	27.89	30.75
CDY13564	Canola	nucleus	26.2	30.69
PGSC0003DMT400075652	Potato	nucleus	28.45	30.61
KRH05902	Soybean	nucleus	28.17	30.58
Bra015835.1-P	Field mustard	nucleus	27.32	30.22
CDY47514	Canola	nucleus	27.32	30.22
CDX68124	Canola	nucleus	27.04	30.09
CDX85903	Canola	nucleus	26.76	29.78
Bra003748.1-P	Field mustard	nucleus	26.76	29.78
KRH24393	Soybean	nucleus	17.18	29.76
Zm00001d051018_P002	Maize	extracellular	20.85	29.25
VIT_03s0038g00340.t01	Wine grape	nucleus	24.51	28.81
AT1G75540.1	Thale cress	nucleus	26.76	28.7
Zm00001d021278_P001	Maize	cytosol	15.49	26.7
KRH60788	Soybean	nucleus	23.94	26.65
Zm00001d039437_P001	Maize	nucleus	23.1	22.84
Zm00001d037735_P001	Maize	cytosol	20.28	22.36
Zm00001d036214_P001	Maize	nucleus	22.54	20.73
Zm00001d045323_P004	Maize	nucleus	23.66	19.91
Zm00001d006198_P001	Maize	cytosol	12.11	16.93
Zm00001d010093_P001	Maize	nucleus	5.63	10.05

Protein Annotations

EnsemblPlants:Zm00001d014765_P001	EnsemblPlants:Zm00001d014765_T001	EnsemblPlantsGene:Zm00001d014765	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31832	PANTHER:PTHR31832:SF11	PFAM:PF00643	PFscan:PS50119	ProteinID:AQK67147.1	SEG:seg
SMART:SM00336	UniParc:UPI0008438D5F	UniProt:A0A1D6GW91	MapMan:15.5.1.1	:	:

Description

double B-box zinc finger protein5B-box zinc finger protein 20

Coordinates

chr5:-:62282614..62284983

Molecular Weight (calculated)

37010.2 Da

IEP (calculated)

5.077

GRAVY (calculated)

-0.235

Length

355 amino acids

Sequence
(BLAST)

001: MQMLCDVCAA APAAVICCAD EAALCSACDR RVHRANKLAH KHRRIPLAQP SGDESDADAK PLCDVCKERR GLVFCVEDRA ILCPDCDDPI HSANDLTAKH
101: TRFLLVGAKL SAALVDAQAP HSPDDDDNDC GRGNGAAAEP DAVPAVCAQG SCAAKASSLE SGGGGGGGSG SGSSISEYLT NICPGWRVDD LLFDDSAFSA
201: ASVSSSPCSV LVFLYPQPYH ANVRIGLSRR FERKQKADSC DDGHEQVPSL DADLFDVVAG AGWPGKRGSA WSGVGALGFD KVPASVVVVP TAAKQQQGCV
301: RERTWDSDSD SDVFAVPELP QPPQAKKARP APAPAPTFWK KITGPLGPTG SESTI

Best Arabidopsis Sequence Match ( AT1G75540.1 )
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W

Arabidopsis Description

BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.