Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG19323 | Sorghum | nucleus | 88.86 | 91.47 |
| HORVU7Hr1G023060.1 | Barley | cytosol, mitochondrion, nucleus | 16.06 | 86.11 |
| Zm00001d010093_P001 | Maize | nucleus | 44.04 | 85.43 |
| Zm00001d045323_P004 | Maize | nucleus | 89.38 | 81.75 |
| Os06t0152200-01 | Rice | nucleus | 67.62 | 72.5 |
| TraesCS7B01G006400.1 | Wheat | nucleus | 63.47 | 72.49 |
| TraesCS7A01G108400.1 | Wheat | nucleus | 66.58 | 71.59 |
| TraesCS7D01G103300.1 | Wheat | nucleus | 67.1 | 71.35 |
| HORVU7Hr1G023100.2 | Barley | plastid | 63.47 | 60.95 |
| GSMUA_Achr6P21590_001 | Banana | nucleus | 40.93 | 52.67 |
| GSMUA_Achr6P14750_001 | Banana | nucleus | 40.93 | 52.32 |
| KRH21881 | Soybean | nucleus | 36.79 | 48.46 |
| Solyc07g062160.2.1 | Tomato | nucleus | 37.05 | 47.99 |
| VIT_19s0014g00350.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 36.27 | 47.78 |
| PGSC0003DMT400018196 | Potato | nucleus | 36.79 | 47.65 |
| KRH37922 | Soybean | nucleus | 36.01 | 47.6 |
| Zm00001d017412_P001 | Maize | nucleus | 17.36 | 47.18 |
| CDX87448 | Canola | nucleus | 34.2 | 45.21 |
| Bra035051.1-P | Field mustard | nucleus | 34.2 | 45.21 |
| CDY69214 | Canola | nucleus | 33.68 | 45.14 |
| CDX79268 | Canola | nucleus | 33.68 | 45.14 |
| Bra003640.1-P | Field mustard | nucleus | 33.42 | 44.79 |
| CDX88458 | Canola | nucleus | 34.2 | 44.75 |
| CDY11657 | Canola | nucleus | 33.94 | 44.41 |
| CDY14607 | Canola | nucleus | 32.9 | 43.64 |
| Bra008371.1-P | Field mustard | nucleus | 32.9 | 43.64 |
| Zm00001d037735_P001 | Maize | cytosol | 36.27 | 43.48 |
| AT1G78600.2 | Thale cress | nucleus | 35.49 | 42.95 |
| Solyc12g005420.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 31.09 | 42.55 |
| CDY26870 | Canola | nucleus | 32.9 | 42.33 |
| PGSC0003DMT400048964 | Potato | nucleus | 32.64 | 42.14 |
| Zm00001d039437_P001 | Maize | nucleus | 37.56 | 40.39 |
| KRH27404 | Soybean | extracellular, vacuole | 37.31 | 38.5 |
| Zm00001d051018_P002 | Maize | extracellular | 21.76 | 33.2 |
| Zm00001d025957_P001 | Maize | nucleus | 21.24 | 32.03 |
| Zm00001d051309_P001 | Maize | nucleus | 22.54 | 31.41 |
| Zm00001d002806_P001 | Maize | nucleus | 20.47 | 30.62 |
| Zm00001d021278_P001 | Maize | cytosol | 15.29 | 28.64 |
| Zm00001d036418_P001 | Maize | nucleus | 18.13 | 26.02 |
| Zm00001d014765_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 20.73 | 22.54 |
| Zm00001d006198_P001 | Maize | cytosol | 12.95 | 19.68 |
Protein Annotations
| EnsemblPlants:Zm00001d036214_P001 | EnsemblPlants:Zm00001d036214_T001 | EnsemblPlantsGene:Zm00001d036214 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | GO:GO:0046872 | InterPro:IPR000315 |
| InterPro:Znf_B-box | PANTHER:PTHR31832 | PANTHER:PTHR31832:SF32 | PFAM:PF00643 | PFscan:PS50119 | ProteinID:AQK80453.1 |
| SEG:seg | SMART:SM00336 | UniParc:UPI00084375E2 | UniProt:A0A1D6LL88 | MapMan:15.5.1.1 | : |
Description
double B-box zinc finger protein8B-box zinc finger protein 22
Coordinates
chr6:+:77322780..77327461
Molecular Weight (calculated)
41592.4 Da
IEP (calculated)
4.967
GRAVY (calculated)
-0.311
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MRIQCNACGA AEARVLCCAD EAALCVACDE EVHAANKLAG KHQRVQLLTD SATAAASPAP AVPKCDICQE ASGYFFCLED RALLCRDCDV AIHTVNSFVS
101: VHQRFLLTGV QVGLDPADPV PPIAEKHVNA SGGSVKQSVR HLPRRSPGVQ FSVEGSASVP SKNVSNGDYS RQNSVPTARA EVVDWTKNNT TIQSVESPPK
201: YMSEESPTLL QSSQTTTVFS NQINGNSDGT YHLSFSSGNV TDSLPDWPVD EFFSNSEYVP NLGFSEHGSS KASCHTIVLS LQGDNAKLES AGGSLQCRLA
301: EGSIAEELLG QVPGLITDDY MSRVPENSWT VPEVPSPPTA SGLNWHGNLC FPAYDSTMFV PEITSLQNSQ NQFTVPSSFK RRRREY
101: VHQRFLLTGV QVGLDPADPV PPIAEKHVNA SGGSVKQSVR HLPRRSPGVQ FSVEGSASVP SKNVSNGDYS RQNSVPTARA EVVDWTKNNT TIQSVESPPK
201: YMSEESPTLL QSSQTTTVFS NQINGNSDGT YHLSFSSGNV TDSLPDWPVD EFFSNSEYVP NLGFSEHGSS KASCHTIVLS LQGDNAKLES AGGSLQCRLA
301: EGSIAEELLG QVPGLITDDY MSRVPENSWT VPEVPSPPTA SGLNWHGNLC FPAYDSTMFV PEITSLQNSQ NQFTVPSSFK RRRREY
001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKTDVLKMKL LDSACLGKKL EKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS
301: TPYTGSSPNQ RVGKRRRRF
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKTDVLKMKL LDSACLGKKL EKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS
301: TPYTGSSPNQ RVGKRRRRF
Arabidopsis Description
LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.