Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- nucleus 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G023060.1 | Barley | cytosol, mitochondrion, nucleus | 17.07 | 88.89 |
| Zm00001d036214_P001 | Maize | nucleus | 91.47 | 88.86 |
| Zm00001d045323_P004 | Maize | nucleus | 94.4 | 83.89 |
| TraesCS7B01G006400.1 | Wheat | nucleus | 68.27 | 75.74 |
| Os06t0152200-01 | Rice | nucleus | 71.73 | 74.72 |
| TraesCS7A01G108400.1 | Wheat | nucleus | 71.2 | 74.37 |
| TraesCS7D01G103300.1 | Wheat | nucleus | 71.73 | 74.1 |
| HORVU7Hr1G023100.2 | Barley | plastid | 67.47 | 62.94 |
| GSMUA_Achr6P21590_001 | Banana | nucleus | 42.93 | 53.67 |
| GSMUA_Achr6P14750_001 | Banana | nucleus | 43.2 | 53.64 |
| KRH21881 | Soybean | nucleus | 38.67 | 49.49 |
| VIT_19s0014g00350.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 38.4 | 49.15 |
| KRH37922 | Soybean | nucleus | 38.13 | 48.97 |
| Solyc07g062160.2.1 | Tomato | nucleus | 38.4 | 48.32 |
| PGSC0003DMT400018196 | Potato | nucleus | 38.13 | 47.99 |
| Bra035051.1-P | Field mustard | nucleus | 35.73 | 45.89 |
| CDX87448 | Canola | nucleus | 35.73 | 45.89 |
| CDX79268 | Canola | nucleus | 34.93 | 45.49 |
| CDY69214 | Canola | nucleus | 34.93 | 45.49 |
| CDX88458 | Canola | nucleus | 35.73 | 45.42 |
| Bra003640.1-P | Field mustard | nucleus | 34.67 | 45.14 |
| CDY11657 | Canola | nucleus | 35.47 | 45.08 |
| EES17867 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 39.73 | 44.35 |
| CDY14607 | Canola | nucleus | 34.4 | 44.33 |
| Bra008371.1-P | Field mustard | nucleus | 34.4 | 44.33 |
| Solyc12g005420.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 32.8 | 43.62 |
| PGSC0003DMT400048964 | Potato | nucleus | 34.67 | 43.48 |
| CDY26870 | Canola | nucleus | 34.4 | 43.0 |
| AT1G78600.2 | Thale cress | nucleus | 36.27 | 42.63 |
| EES02283 | Sorghum | nucleus | 38.93 | 41.48 |
| KRH27404 | Soybean | extracellular, vacuole | 39.2 | 39.3 |
| EES12431 | Sorghum | nucleus | 25.87 | 36.19 |
| EES15831 | Sorghum | nucleus | 23.2 | 35.51 |
| EES07119 | Sorghum | nucleus | 23.47 | 33.46 |
| OQU82040 | Sorghum | nucleus | 22.13 | 31.32 |
| EES07539 | Sorghum | nucleus | 23.2 | 29.49 |
| EER97079 | Sorghum | cytosol | 15.47 | 27.49 |
| EER90373 | Sorghum | cytosol | 21.07 | 25.9 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | UniProt:A0A194YH99 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009641 |
| GO:GO:0009658 | GO:GO:0009718 | GO:GO:0009987 | GO:GO:0015995 | GO:GO:0016043 | GO:GO:0016607 |
| GO:GO:0043565 | GO:GO:0046872 | InterPro:IPR000315 | EnsemblPlants:KXG19323 | ProteinID:KXG19323 | ProteinID:KXG19323.1 |
| PFAM:PF00643 | PFscan:PS50119 | PANTHER:PTHR31832 | PANTHER:PTHR31832:SF32 | SMART:SM00336 | EnsemblPlantsGene:SORBI_3010G041700 |
| UniParc:UPI00022072C7 | InterPro:Znf_B-box | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:3229753..3235258
Molecular Weight (calculated)
40202.7 Da
IEP (calculated)
4.791
GRAVY (calculated)
-0.338
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCNACGA AEARVLCCAD EAALCVACDE EVHAANKLAG KHQRVPLLTD ADAAGTAAAA PAVPKCDICQ EASGYFFCLE DRALLCRDCD VAIHTVNSFV
101: SVHQRFLLTG VQVGLDPADP VPPIAEKHVN AAGGSVNQPV KHLPRRSPTV QFSVEGSASV PSKNVTNGDY SRQNSVPTAR AEVVDWTMNN STIRSVESPP
201: KYMSEESPTL LQSSQTTTAF NQINGNSDGP YHLSFSGGNV TDSLPDWPVE EFFSNSEYGP NFGFSEHGSS KGDNAKLGNA GGSPQCRLAE GSVAEELLGQ
301: VPGLITDEYM SRVPENSWTV PEVPSPPTAS GLNWHGNLCF PAYDSTMFVP EITSLQTSQN QFAVPSSFKR RRREY
101: SVHQRFLLTG VQVGLDPADP VPPIAEKHVN AAGGSVNQPV KHLPRRSPTV QFSVEGSASV PSKNVTNGDY SRQNSVPTAR AEVVDWTMNN STIRSVESPP
201: KYMSEESPTL LQSSQTTTAF NQINGNSDGP YHLSFSGGNV TDSLPDWPVE EFFSNSEYGP NFGFSEHGSS KGDNAKLGNA GGSPQCRLAE GSVAEELLGQ
301: VPGLITDEYM SRVPENSWTV PEVPSPPTAS GLNWHGNLCF PAYDSTMFVP EITSLQTSQN QFAVPSSFKR RRREY
001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
Arabidopsis Description
LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.