CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039437_P001	Maize	nucleus	89.2	87.47
Os01t0202500-01	Rice	cytosol, nucleus	66.76	66.38
TraesCS3A01G139300.1	Wheat	nucleus	63.35	63.9
TraesCS3D01G139600.1	Wheat	nucleus	62.5	63.04
TraesCS3B01G156900.1	Wheat	nucleus	62.22	62.75
HORVU3Hr1G026500.4	Barley	nucleus	61.65	62.18
EES17867	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	53.12	55.65
KXG19323	Sorghum	nucleus	41.48	38.93
EES15831	Sorghum	nucleus	24.72	35.51
EES12431	Sorghum	nucleus	26.7	35.07
EES07119	Sorghum	nucleus	26.14	34.98
EER97079	Sorghum	cytosol	17.33	28.91
OQU82040	Sorghum	nucleus	21.31	28.3
EES07539	Sorghum	nucleus	23.01	27.46
EER90373	Sorghum	cytosol	21.88	25.25

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	EntrezGene:8084320	UniProt:C5XL81	EnsemblPlants:EES02283	ProteinID:EES02283
ProteinID:EES02283.1	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009791
GO:GO:0009987	GO:GO:0046872	InterPro:IPR000315	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832
PANTHER:PTHR31832:SF13	SMART:SM00336	EnsemblPlantsGene:SORBI_3003G026700	UniParc:UPI0001A84EFD	RefSeq:XP_002457163.1	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:2254987..2257469

Molecular Weight (calculated)

36552.3 Da

IEP (calculated)

5.531

GRAVY (calculated)

-0.305

Length

352 amino acids

Sequence
(BLAST)

001: MKVLCSACEA AEARLLCCAD EAALCARCDR DVHAANRLAG KHHRLPLIPH ADVSAPNCDI CQEAHAYFFC VEDRALLCRA CDVAVHTANA FVSAHRRFLL
101: TGVQVGLQPD AAADADDPNP PTAAAASDPL QTPPPPDRKA AAAGGGSPAP LYSDDDIDWA PGADAGAGVG LPDWALVHEQ FSAPPVTRPA DPALARTPAS
201: KRSPRRSLAA AFTVQSGGGL AGGLPDWPLD EFFGFSEYSA GLGFAENGTS KADSGKLGST DGSPAGRSSS DASQDFFGQV PEFHQWSVPE LPSPPTASGL
301: HWQGGPRHGA TTTTDTNTAA VSVPDISSPE NPFRCYAATA AGQPPAKRRR RC

Best Arabidopsis Sequence Match ( AT1G78600.1 )
(BLAST)

001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF

Arabidopsis Description

LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.