Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G139600.1 | Wheat | nucleus | 96.28 | 96.28 |
| TraesCS3A01G139300.1 | Wheat | nucleus | 94.84 | 94.84 |
| HORVU3Hr1G026500.4 | Barley | nucleus | 92.84 | 92.84 |
| Os01t0202500-01 | Rice | cytosol, nucleus | 67.34 | 66.38 |
| EES02283 | Sorghum | nucleus | 62.75 | 62.22 |
| Zm00001d039437_P001 | Maize | nucleus | 62.46 | 60.72 |
| TraesCS7B01G006400.1 | Wheat | nucleus | 40.4 | 41.72 |
| TraesCS6B01G172300.1 | Wheat | nucleus | 24.07 | 39.25 |
| TraesCS6B01G285200.1 | Wheat | nucleus | 23.78 | 34.87 |
| TraesCS2B01G367300.2 | Wheat | nucleus | 23.78 | 32.17 |
| TraesCS2B01G406600.2 | Wheat | nucleus | 23.78 | 31.32 |
| TraesCS6B01G246500.1 | Wheat | extracellular | 23.21 | 31.15 |
| TraesCS5B01G317700.1 | Wheat | cytosol | 16.91 | 27.96 |
| TraesCS7B01G286300.1 | Wheat | nucleus | 22.92 | 25.72 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G156900.1 | EnsemblPlantsGene:TraesCS3B01G156900 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31832 |
| PANTHER:PTHR31832:SF13 | PFAM:PF00643 | PFscan:PS50119 | SEG:seg | SMART:SM00336 | TIGR:cd00021 |
| MapMan:15.5.1.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:150154973..150156903
Molecular Weight (calculated)
37479.6 Da
IEP (calculated)
5.082
GRAVY (calculated)
-0.438
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVLCSACEA PEARVLCCAD EAALCARCDR DVHDANRLAG KHHRLPLLSA ASNPPAVSAP NCDICQEGHA YFFCVEDRAL LCRSCDVAVH TANAFVSAHR
101: RFLLTGVQVS LEPDEQEEPV PEPEPEPQPP NNASSAPLPP PMCHRKRSPT PLYSDGDIDW AAGPDVGITG NLPDWSVIDE QFGSGTPALR PAEPEVIKAP
201: PRKSPRVAVT AASAALFGGS MPDWPLDEFF GFTEFNSGFG FAENGTSKAD SGKLSSPNRR SMSSSSSGNA TQNAQDFFGQ VPEVHWSRST MPELPSPPTA
301: SGLHWQGDPH YGPASDSGAV FVPDICSPEN PFRCFTAGAD QQLKRRRRC
101: RFLLTGVQVS LEPDEQEEPV PEPEPEPQPP NNASSAPLPP PMCHRKRSPT PLYSDGDIDW AAGPDVGITG NLPDWSVIDE QFGSGTPALR PAEPEVIKAP
201: PRKSPRVAVT AASAALFGGS MPDWPLDEFF GFTEFNSGFG FAENGTSKAD SGKLSSPNRR SMSSSSSGNA TQNAQDFFGQ VPEVHWSRST MPELPSPPTA
301: SGLHWQGDPH YGPASDSGAV FVPDICSPEN PFRCFTAGAD QQLKRRRRC
001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
Arabidopsis Description
LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.