Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G326100.1 | |
| TraesCS6B01G356400.1 | |
| TraesCS6D01G305800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75540.1 | TraesCS6A01G326100.1 | AT2G32950.1 | 17965270 |
| AT1G75540.1 | TraesCS6B01G356400.1 | AT2G32950.1 | 17965270 |
| AT1G75540.1 | TraesCS6D01G305800.1 | AT2G32950.1 | 17965270 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G388500.1 | Wheat | nucleus | 94.34 | 96.9 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 93.21 | 94.27 |
| HORVU2Hr1G092460.9 | Barley | cytosol, mitochondrion, nucleus | 84.53 | 78.6 |
| Os04t0540200-01 | Rice | nucleus | 68.68 | 72.8 |
| OQU82040 | Sorghum | nucleus | 68.3 | 68.3 |
| Zm00001d002806_P001 | Maize | nucleus | 66.04 | 67.83 |
| Zm00001d025957_P001 | Maize | nucleus | 64.53 | 66.8 |
| TraesCS6B01G285200.1 | Wheat | nucleus | 59.62 | 66.39 |
| Solyc01g110180.2.1 | Tomato | nucleus | 34.72 | 45.32 |
| CDY41957 | Canola | nucleus | 32.45 | 40.57 |
| KRH51757 | Soybean | nucleus | 36.98 | 40.0 |
| CDY42602 | Canola | nucleus | 34.34 | 38.89 |
| KRH51476 | Soybean | nucleus | 33.96 | 38.63 |
| Bra011879.1-P | Field mustard | nucleus | 34.72 | 38.49 |
| CDY12117 | Canola | nucleus | 34.34 | 37.6 |
| Bra010713.1-P | Field mustard | nucleus | 33.96 | 37.34 |
| CDX90306 | Canola | nucleus | 33.96 | 37.34 |
| AT4G39070.1 | Thale cress | cytosol | 33.96 | 37.19 |
| KRH17384 | Soybean | nucleus | 38.49 | 36.96 |
| PGSC0003DMT400079507 | Potato | nucleus | 35.09 | 36.9 |
| Solyc04g081020.2.1 | Tomato | nucleus | 40.38 | 35.79 |
| VIT_18s0001g13520.t01 | Wine grape | nucleus | 40.75 | 35.64 |
| PGSC0003DMT400009514 | Potato | nucleus | 40.0 | 35.57 |
| TraesCS7B01G286300.1 | Wheat | nucleus | 41.13 | 35.05 |
| KRH61078 | Soybean | nucleus | 35.09 | 34.96 |
| VIT_03s0038g00340.t01 | Wine grape | nucleus | 38.87 | 34.11 |
| KRH29378 | Soybean | nucleus | 35.85 | 32.99 |
| Bra008204.1-P | Field mustard | nucleus | 37.36 | 32.78 |
| CDX73178 | Canola | nucleus | 38.87 | 31.99 |
| CDY47514 | Canola | nucleus | 38.49 | 31.78 |
| Bra015835.1-P | Field mustard | nucleus | 38.49 | 31.78 |
| CDY13564 | Canola | nucleus | 36.23 | 31.68 |
| Solyc12g089240.1.1 | Tomato | nucleus | 39.25 | 31.61 |
| KRH05902 | Soybean | nucleus | 38.87 | 31.5 |
| CDY39040 | Canola | nucleus | 34.72 | 31.29 |
| PGSC0003DMT400075652 | Potato | nucleus | 38.87 | 31.21 |
| KRH24393 | Soybean | nucleus | 23.4 | 30.24 |
| CDX68124 | Canola | nucleus | 36.23 | 30.09 |
| CDX85903 | Canola | nucleus | 36.23 | 30.09 |
| AT1G75540.1 | Thale cress | nucleus | 37.36 | 29.91 |
| TraesCS6B01G172300.1 | Wheat | nucleus | 24.15 | 29.91 |
| Bra003748.1-P | Field mustard | nucleus | 35.85 | 29.78 |
| KRH60788 | Soybean | nucleus | 33.96 | 28.21 |
| TraesCS6B01G246500.1 | Wheat | extracellular | 27.55 | 28.08 |
| TraesCS2B01G367300.2 | Wheat | nucleus | 27.17 | 27.91 |
| TraesCS5B01G317700.1 | Wheat | cytosol | 21.13 | 26.54 |
| TraesCS7B01G006400.1 | Wheat | nucleus | 31.7 | 24.85 |
| TraesCS3B01G156900.1 | Wheat | nucleus | 31.32 | 23.78 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G406600.2 | EnsemblPlantsGene:TraesCS2B01G406600 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31832 |
| PANTHER:PTHR31832:SF10 | PFAM:PF00643 | PFscan:PS50119 | SEG:seg | SMART:SM00336 | TIGR:cd00021 |
| MapMan:15.5.1.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:575903798..575905111
Molecular Weight (calculated)
27953.5 Da
IEP (calculated)
6.152
GRAVY (calculated)
-0.345
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVQCDVCEA EAASVFCCAD EAALCDACDR RVHRADKLAG KHRRLSLLHP SPSSPSSSPS SKPPLCDICQ EKRGFLFCKE DRAILCRECD VQVHTVSELT
101: RRHGRFLLTG VRVSSAPAES PAPSGQEEAE GNSTSPCNAD SCSGDASGTA SASATASDGS SISEYLTKTL PGWHVEDFLL DDAAASAAVT VSSNKPYQQV
201: GLARIGGPQE GYPAWAGQEQ LIGGVVVAAG ERASRELWVP QMHAGAAWTG SKRPRPSSLG SSSYW
101: RRHGRFLLTG VRVSSAPAES PAPSGQEEAE GNSTSPCNAD SCSGDASGTA SASATASDGS SISEYLTKTL PGWHVEDFLL DDAAASAAVT VSSNKPYQQV
201: GLARIGGPQE GYPAWAGQEQ LIGGVVVAAG ERASRELWVP QMHAGAAWTG SKRPRPSSLG SSSYW
001: MKIWCAVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TFKDAPLCDI CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS
Arabidopsis Description
BBX20B-box zinc finger protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q0IGM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.