Factsheet for VIT_18s0001g13520.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0059g01420.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75540.1	VIT_12s0059g01420.t01	AT2G32950.1	17965270

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17384	Soybean	nucleus	54.79	60.14
PGSC0003DMT400009514	Potato	nucleus	55.45	56.38
Solyc04g081020.2.1	Tomato	nucleus	55.45	56.19
KRH51757	Soybean	nucleus	44.22	54.69
GSMUA_Achr11P...	Banana	cytosol	35.31	54.04
GSMUA_Achr11P...	Banana	nucleus	32.67	53.51
PGSC0003DMT400075652	Potato	nucleus	56.77	52.12
Zm00001d017412_P001	Maize	nucleus	24.42	52.11
Solyc12g089240.1.1	Tomato	nucleus	56.44	51.98
KRH61078	Soybean	nucleus	45.54	51.88
Bra008204.1-P	Field mustard	nucleus	51.16	51.32
CDY13564	Canola	nucleus	51.16	51.16
CDX85903	Canola	nucleus	53.8	51.1
GSMUA_Achr9P20930_001	Banana	cytosol	31.35	51.08
CDY47514	Canola	nucleus	53.8	50.78
Bra015835.1-P	Field mustard	nucleus	53.8	50.78
KRH05902	Soybean	nucleus	54.79	50.76
CDY39040	Canola	nucleus	49.17	50.68
Bra003748.1-P	Field mustard	nucleus	53.14	50.47
CDX68124	Canola	nucleus	53.14	50.47
GSMUA_Achr4P05180_001	Banana	cytosol	33.66	50.25
CDX73178	Canola	nucleus	52.48	49.38
VIT_03s0038g00340.t01	Wine grape	nucleus	49.17	49.34
AT1G75540.1	Thale cress	nucleus	53.14	48.64
GSMUA_AchrUn_...	Banana	nucleus	43.23	47.12
TraesCS6B01G285200.1	Wheat	nucleus	35.97	45.8
TraesCS6A01G239300.1	Wheat	nucleus	35.64	45.76
TraesCS6D01G221700.1	Wheat	nucleus	35.64	45.38
GSMUA_Achr11P...	Banana	nucleus	37.95	43.89
Os04t0540200-01	Rice	nucleus	35.64	43.2
Os02t0646200-01	Rice	nucleus	37.62	42.38
Zm00001d002806_P001	Maize	nucleus	35.97	42.25
Zm00001d025957_P001	Maize	nucleus	35.64	42.19
TraesCS2A01G388500.1	Wheat	nucleus	35.64	41.86
TraesCS2D01G386300.1	Wheat	nucleus	35.64	41.22
TraesCS2B01G406600.2	Wheat	nucleus	35.64	40.75
OQU82040	Sorghum	nucleus	35.31	40.38
EES07539	Sorghum	nucleus	38.28	39.32
Zm00001d051309_P001	Maize	nucleus	34.98	38.27
HORVU2Hr1G092460.9	Barley	cytosol, mitochondrion, nucleus	35.64	37.89
HORVU7Hr1G091180.1	Barley	nucleus	34.32	37.82
Os06t0713000-01	Rice	nucleus	37.29	36.69
TraesCS7D01G379900.1	Wheat	nucleus	33.99	36.14
Zm00001d036418_P001	Maize	nucleus	31.35	35.32
EER90373	Sorghum	cytosol	34.32	34.1
TraesCS7B01G286300.1	Wheat	nucleus	34.98	34.08
TraesCS7A01G383400.3	Wheat	nucleus	34.65	33.55
VIT_05s0102g00750.t01	Wine grape	nucleus	26.4	33.47
VIT_18s0089g01280.t01	Wine grape	nucleus	21.45	31.71
GSMUA_Achr1P07740_001	Banana	nucleus	40.59	31.38
VIT_19s0014g00350.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	29.04	30.03
Zm00001d014765_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	34.98	29.86
VIT_04s0023g03030.t01	Wine grape	cytosol	17.82	29.35
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	35.97	28.46
VIT_03s0038g00690.t01	Wine grape	cytosol	18.81	27.14

Protein Annotations

EntrezGene:100264386	wikigene:100264386	MapMan:15.5.1.1	Gene3D:3.30.40.200	ProteinID:CBI19794	ProteinID:CBI19794.3
UniProt:E0CPH8	EMBL:FN595227	GO:GO:0000989	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009628	GO:GO:0009640	GO:GO:0009641	GO:GO:0009791	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000315	EntrezGene:LOC100264386	wikigene:LOC100264386	PFAM:PF00643	PFscan:PS50119
PANTHER:PTHR31832	PANTHER:PTHR31832:SF6	SMART:SM00336	UniParc:UPI000198521A	ArrayExpress:VIT_18s0001g13520	EnsemblPlantsGene:VIT_18s0001g13520
EnsemblPlants:VIT_18s0001g13520.t01	unigene:Vvi.24434	RefSeq:XP_002280716	RefSeq:XP_002280716.1	InterPro:Znf_B-box	SEG:seg

Description

No Description!

Coordinates

chr18:+:11546677..11548061

Molecular Weight (calculated)

33158.8 Da

IEP (calculated)

6.664

GRAVY (calculated)

-0.444

Length

303 amino acids

Sequence
(BLAST)

001: MKIHCDVCSR EEATVFCTAD EAALCDACDH RVHHANKLAS KHQRFSLLHP SPKQVPLCDV CQEKRAFLFC QQDRAILCRD CDLPIHTANE HTQKHNRFLL
101: TGIKLSATSA LYSSTTSVAD SVSDHKSQSS LKKPESVPPE ISHPPSITKT SSPTTAINSI NKGGDASLTS EGVSTSSISE YLIEMLPGWH VEDFLDSTSA
201: PSGFCKSAGD DVLPYLLDAD LDNNLSSFSS ENLGVWVPQA PTPLHPSQYS SFMGGQIGLK ESKEATTMKP NSKKWGDDVF TVPQISPPSV GSKRSRSFWQ
301: YHH

Best Arabidopsis Sequence Match ( AT1G75540.1 )
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W

Arabidopsis Description

BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.